1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactgtaactctcaaaaaactggctgattttcttcagaacttaacagcagctgaaagttttgctgttcttgtgtttaactaatttttgtttggatttctttttgtgccaacctgcagGAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCAGGTTGAAGAGAACAAAACCAAAGAATGCCTGAGAAGAGAGGACACGCTTAATTACAGTTCT
species | Oryza sativa |
transcript | LOC_Os01g07730.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGCGTCTGTTCTCTTCTTCAGAACCCCAATTTCACCTGTCAATGCAATAG GAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCAGGTTGAAGAGAAEST: gi|88508651|gb|CI436157.1|CI436157
genomic: GGCGTCTGTTCTCTTCTTCAGAACCCCAATTTCACCTGTCAATGCACTAGgtactgtaac ... caacctgcagGAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCAGGTTGAAGAGAA
EST: GGCGTCTGTTCTCTTCTTCAGAACCCCAATTTCACCTGTCAATGCACTAG GAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCAGGTTGAAGAGAAEST: gi|88226019|gb|CI225935.1|CI225935
genomic: GGCGTCTGTTCTCTTCTTCAGAACCCCAATTTCACCTGTCAATGCACTAGgtactgtaac ... caacctgcagGAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCAGGTTGAAGAGAA
EST: GGCGTCTGTTCTCTTCTTCAGAACCCCAATTTCACCTGTCAATGCACTAG GAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCAGGTTGAAGAGAAEST: gi|88847934|gb|CI006120.1|CI006120
genomic: GGCGTCTGTTCTCTTCTTCAGAACCCCAATTTCACCTGTCAATGCACTAGgtactgtaac ... caacctgcagGAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCAGGTTGAAGAGAA
EST: GGCGTCTGTTCTCTTCTTCAGAACCCCAATTTCACCTGTCAATGCACTAG GAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCAGGTTGAAGAGAA
genomic: GGCGTCTGTTCTCTTCTTCAGAACCCCAATTTCACCTGTCAATGCACTAGgtactgtaac ... caacctgcagGAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCAGGTTGAAGAGAA
ctgttcttgtgtttaactaatttttgtttggatttctttttgtgccaacctgcagGAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCAGGTTGAAGAGAACAAAACCAAAGAATGCCTGAGAAGAGAGGACACGCTTAATTACAGTTCT
aactaat putative branch site (score: 11)
tttctttttgtgcc putative PPT
tttaactaatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtaactctcaaaaaactggctgattttcttcagaacttaacagcagctgaaagttttgctgttcttgtgtttaactaatttttgtttggatttctttttgtgccaacctgcagGAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCAGGTTGAAGAGAACAAAACCAAAGAATGCCTGAGAAGAGAGGACACGCTTAATTACAGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA