1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaacacgctactattgcatggtccttttccacttcagttggcatattcagaaccattttggcaaaccacttggatttattctcttatatcaccgccctttgttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCACTGCCTATTCGTCACTGCTGTTGCTATTCATTCACATCTCCATCTTGTTT
species | Oryza sativa |
transcript | LOC_Os01g07720.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCACEST: gi|89193425|gb|CI050723.1|CI050723
genomic: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: CTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCACEST: gi|88247507|gb|CI247356.1|CI247356
genomic: CTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCACEST: gi|86499763|gb|CI142396.1|CI142396
genomic: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCACEST: gi|33800779|gb|CF326261.1|CF326261
genomic: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCACEST: gi|89161465|gb|CI099437.1|CI099437
genomic: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCACEST: gi|88228317|gb|CI227797.1|CI227797
genomic: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCACEST: gi|163925452|gb|EG711565.1|EG711565
genomic: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCACEST: gi|88484104|gb|CI421375.1|CI421375
genomic: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: CGTTTTCCAACATTTGTGAG GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCACEST: gi|86492318|gb|CI134951.1|CI134951
genomic: CGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCACEST: gi|86420213|gb|CI055014.1|CI055014
genomic: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: TCCAACATTTGTGAG GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
genomic: TCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
ttttggcaaaccacttggatttattctcttatatcaccgccctttgttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCACTGCCTATTCGTCACTGCTGTTGCTATTCATTCACATCTCCATCTTGTTT
ccgccctttgttctct CT-rich tract
atttattctcttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacacgctactattgcatggtccttttccacttcagttggcatattcagaaccattttggcaaaccacttggatttattctcttatatcaccgccctttgttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCACTGCCTATTCGTCACTGCTGTTGCTATTCATTCACATCTCCATCTTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT