1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ataccagtatttatccgttctattcaaacttgttaatatagaaaacatgctgtaccttttgcattttgctgagctctaaaataccgaaattgcaatgcagGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATG
species | Oryza sativa |
transcript | LOC_Os01g06020.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGATGTACAACAAAGGATTTTTGAGATCATCGGTATCTCACCCGAGCAG GCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTEST: gi|29638703|gb|CB643712.1|CB643712
genomic: GTGATGTACAACAAAGGATTTTTGAGATCATCGGTATCTCACCCGAGCAGgtattatatt ... tgcaatgcagGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCT
EST: GTGATGTACAACAAAGGATTTTTGAGATCATCGGTATCTCACCCGAGCAG GCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTEST: gi|86865547|gb|CI330974.1|CI330974
genomic: GTGATGTACAACAAAGGATTTTTGAGATCATCGGTATCTCACCCGAGCAGgtattatatt ... tgcaatgcagGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCT
EST: ACAACAAAGGATTTTTGAGATCATC-GTATCTCACCCGAGCAG GCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTEST: gi|88844843|gb|CI022197.1|CI022197
genomic: ACAACAAAGGATTTTTGAGATCATCGGTATCTCACCCGAGCAGgtattatatt ... tgcaatgcagGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCT
EST: GTGATGTACAACAAAGGATTTTTGAGATCATCGGTATCTCACCCGAGCAG GCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTEST: gi|88508877|gb|CI436383.1|CI436383
genomic: GTGATGTACAACAAAGGATTTTTGAGATCATCGGTATCTCACCCGAGCAGgtattatatt ... tgcaatgcagGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCT
EST: AAGGATTTTTGAGATCATCGGGTATCTCACCCGAGCAG GCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTEST: gi|86873199|gb|CI328579.1|CI328579
genomic: AAGGATTTTTGAGATCATC-GGTATCTCACCCGAGCAGgtattatatt ... tgcaatgcagGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCT
EST: AACAAAGGATTTTTGAGATCATC-GTATCTCACCCGAGCAG GCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTEST: gi|29634058|gb|CB639067.1|CB639067
genomic: AACAAAGGATTTTTGAGATCATCGGTATCTCACCCGAGCAGgtattatatt ... tgcaatgcagGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCT
EST: GTGATGTACAACAAAGGATTTTTGAGATCATCGGTATCTCACCCGAGCAG GCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTEST: gi|88470267|gb|CI407538.1|CI407538
genomic: GTGATGTACAACAAAGGATTTTTGAGATCATCGGTATCTCACCCGAGCAGgtattatatt ... tgcaatgcagGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCT
EST: GAGATCATCGGTATCTCACCCGAGCAG GCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCT
genomic: GAGATCATCGGTATCTCACCCGAGCAGgtattatatt ... tgcaatgcagGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCT
catgctgtaccttttgcattttgctgagctctaaaataccgaaattgcaatgcagGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATG
ctctaaa putative branch site (score: 13)
tctaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataccagtatttatccgttctattcaaacttgttaatatagaaaacatgctgtaccttttgcattttgctgagctctaaaataccgaaattgcaatgcagGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - -atagaaaa
- - - - - - - - - - - - - - - - - - - - - - -catgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accgaaa