Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cggtaccacgtcaatgaatgctaggctggcacaatattattatttgtttacattgatataatcacactctgtttacttaacttctatatgatgatggaacTTCGTTTGAATATAGAG

Basic information

species Oryza sativa
transcript LOC_Os01g05510.1
intron # 8
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29640997|gb|CB646004.1|CB646004
EST:     TCACAAGAAGAGGATGTGGTATTCTATGGATACACACTTCGTCACGTACA                         TTCGTTTGAATATAGAG
genomic: TCACAAGAAGAGGATGTGGTATTCTATGGATACACACTTCGTCACGTACAatatcctttc ... atgatggaacTTCGTTTGAATATAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttacattgatataatcacactctgtttacttaacttctatatgatgatggaacTTCGTTTGAATATAGAG
                           ttacttaac  putative branch site 
      attgatataat  TA-rich tract