1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtggcatcatacttcatttccctctgaatttcccgtgcatggttgagattaattgcttacatacacttctgctatatatctattcttttcagTGACGGTGAGCCTGAAAAACCATTGATAATCCATGTAGGACGCTTTGGGCGTGAAAAGAACTTGGATTTTCTGAAAAC
species | Oryza sativa |
transcript | LOC_Os01g04920.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCCAGTTTCCATCCCAAGTTCCGCAGTCACGAAATGCGAGTTAGACTAAG TGACGGCGAGCCTGAAAAACCATTGATAATCCATGTAGGACGCTTTGGGCGEST: gi|58662804|gb|CK051490.1|CK051490
genomic: GCCAGTTTCCATCCCAAGTTCCGCAGTCACGAAATGCGAGTTAGACTAAGgtggcatcat ... ttcttttcagTGACGGTGAGCCTGAAAAACCATTGATAATCCATGTAGGACGCTTTGGGCG
EST: CCGCAGTCACGAAATGCGAGTTAGACTAAG TGACGGTGAGCCTGAAAAACCATTGATAATCCATGTAGGACGCTTTGGGCGEST: gi|58674681|gb|CK063368.1|CK063368
genomic: CCGCAGTCACGAAATGCGAGTTAGACTAAGgtggcatcat ... ttcttttcagTGACGGTGAGCCTGAAAAACCATTGATAATCCATGTAGGACGCTTTGGGCG
EST: GCCAGTTTCCATCCCAAGTTCCGCAGTCACGAAATGCGAGTTAGACTAAG TGACGGTGAGCCTGAAAAACCATTGATAATCCATGTAGGACGCTTTGGGCGEST: gi|58672193|gb|CK060879.1|CK060879
genomic: GCCAGTTTCCATCCCAAGTTCCGCAGTCACGAAATGCGAGTTAGACTAAGgtggcatcat ... ttcttttcagTGACGGTGAGCCTGAAAAACCATTGATAATCCATGTAGGACGCTTTGGGCG
EST: GCCAGTTTCCATCCCAAGTTCCGCAGTCACGAAATGCGAGTTAGACTAAG TGACGGTGAGCCTGAAAAACCATTGATAATCCATGTAGGACGCTTTGGGCG
genomic: GCCAGTTTCCATCCCAAGTTCCGCAGTCACGAAATGCGAGTTAGACTAAGgtggcatcat ... ttcttttcagTGACGGTGAGCCTGAAAAACCATTGATAATCCATGTAGGACGCTTTGGGCG
catggttgagattaattgcttacatacacttctgctatatatctattcttttcagTGACGGTGAGCCTGAAAAACCATTGATAATCCATGTAGGACGCTTTGGGCGTGAAAAGAACTTGGATTTTCTGAAAAC
tgcttac putative branch site (score: 10)
tatctattcttttc putative PPT
tatatatctattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggcatcatacttcatttccctctgaatttcccgtgcatggttgagattaattgcttacatacacttctgctatatatctattcttttcagTGACGGTGAGCCTGAAAAACCATTGATAATCCATGTAGGACGCTTTGGGCGTGAAAAGAACTTGGATTTTCTGAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC