1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtatcccttttatgaacaagtaatcactgtttacaaaccaatttcctgtcttcacaaatgtctaccatgtttaaatttgctactttctcatcctacacagCGATATCAGCAATCTCTGCAAAAAGGAATAGGTATCAGAGGGCGAAGTCTGTAATGCTTGCCGAGATGGAGGCGCACGGCCCGGACGGTTATTATACCAA
species | Oryza sativa |
transcript | LOC_Os01g04720.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGAAGAGGACCGTACGATTATGATTTTGAGTTCCCCCAAGATTTGACTT CGATATCAGCAATCTCTGCAAAAAGGAATAGGTATCAGAGGGCGAAGTCTGEST: gi|9864925|gb|AU100675.1|AU100675
genomic: CAGAAGAGGACCGTACGATTATGATTTTGAGTTCCCCCAAGATTTGACTTgtgagtatac ... tcctacacagCGATATCAGCAATCTCTGCAAAAAGGAATAGGTATCAGAGGGCGAAGTCTG
EST: AAAGAGGCCCGTACCGATTATGATTTTGAG-TCCCCCAANGATTTGACTT CGATATCAGCAATCTCTGCAAAAAGGAATAGGTATCAGAGGGCGAAGTCTG
genomic: -AAGAGGACCGTA-CGATTATGATTTTGAGTTCCCCCAA-GATTTGACTTgtgagtatac ... tcctacacagCGATATCAGCAATCTCTGCAAAAAGGAATAGGTATCAGAGGGCGAAGTCTG
ctgtcttcacaaatgtctaccatgtttaaatttgctactttctcatcctacacagCGATATCAGCAATCTCTGCAAAAAGGAATAGGTATCAGAGGGCGAAGTCTGTAATGCTTGCCGAGATGGAGGCGCACGGCCCGGACGGTTATTATACCAA
ctactttctcatcct CT-rich tract
atgtttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcccttttatgaacaagtaatcactgtttacaaaccaatttcctgtcttcacaaatgtctaccatgtttaaatttgctactttctcatcctacacagCGATATCAGCAATCTCTGCAAAAAGGAATAGGTATCAGAGGGCGAAGTCTGTAATGCTTGCCGAGATGGAGGCGCACGGCCCGGACGGTTATTATACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - -gaacaag
- - - - - - - - - - - - - - - - - aaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctact