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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattcttcaacatattactggtagcttatcacttgtcaggtacttcatgaccttatgttatataagttatctgcaattatgggatcacactagtgttaaactgttagcataatggtactatgttggcatatctgcaattaagttagttttactcttatcagGCAAGGAAGTGCAACATTGGACAATAGAGCTGGTGGCAACATGAAGGTAATTGTCATTCCTTTTGTTTAAAAGGCCACATAGTATTGCTCATCAAGACTC

Basic information

species Oryza sativa
transcript LOC_Os01g04200.3
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g04200.3 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G150866_T04 (Zea mays), 3'ss of exon 8
gtaagtattcttcaacatattactggtagcttatcacttgtcaggtacttcatgaccttatgttatataagttatctgcaattatgggatca-cactagtgt----taaactgttagcataatggtactatgttggcatatctgcaattaagttagttttactcttat-cagGCAAGGAAGTGCAACATTGGACAATAGAGCTGGTGGCAACATGAAGGTAATTGTCATTCCTTTTGTTTAAAAGGCCACATAGTATTGCTCATCAAGACTC
                                                                       | |     | |  | |  ||| || |||| |    |  ||| | | | |||  | |  ||||  ||  |  ||  |  ||| |  |||||| | | | |||||| ||||||||||| ||||||| ||||  ||||||||||||||||                                                      
-----------------------------------------------------------------------taaaacaaagtggtagagtcaacattagtatgctatgtactctaaacctaaatgcatcatgtatgcgaagttgttaa-aagatgtttttacccatttgcagGCATGGAAGTGCAACCTTGGACAGTAGAAATGGTGGCAACATGAAG------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcataatggtactatgttggcatatctgcaattaagttagttttactcttatcagGCAAGGAAGTGCAACATTGGACAATAGAGCTGGTGGCAACATGAAGGTAATTGTCATTCCTTTTGTTTAAAAGGCCACATAGTATTGCTCATCAAGACTC
                                        ttttactctt  CT-rich tract
                             aattaagttagtttta  TA-rich tract