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gtatgccacacatgctctcggtgcactaagaagagaaaatgttgctgctagtgcttgtactgttggaataccagattttgaaattttagtgcaaaataaattgcagGTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAAGATGCCCTTAATGCAACAAAG
species | Oryza sativa |
transcript | 13113.m00214 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAG GTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAAEST: gi|58588707|gb|CF987015.1|CF987015
genomic: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAGgtatgccaca ... taaattgcagGTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAA
EST: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAG GTCGGTGCTCAAACAATCATTGAGATGAAAGACANAGAAAGCTCANGAATTEST: gi|58687450|gb|CK076137.1|CK076137
genomic: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAGgtatgccaca ... taaattgcagGTCGGTGCTCAAACAATCATTGAGATGAAAGACA-AGAA-GCTCA-GAATT
EST: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAG GTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAAEST: gi|58688418|gb|CK077105.1|CK077105
genomic: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAGgtatgccaca ... taaattgcagGTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAA
EST: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAG GTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAAEST: gi|29638632|gb|CB643641.1|CB643641
genomic: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAGgtatgccaca ... taaattgcagGTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAA
EST: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAG GTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAAEST: gi|58693979|gb|CK082666.1|CK082666
genomic: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAGgtatgccaca ... taaattgcagGTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAA
EST: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAG GTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAAEST: gi|33681193|gb|CF309432.1|CF309432
genomic: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAGgtatgccaca ... taaattgcagGTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAA
EST: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAG GTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAAEST: gi|33681075|gb|CF309314.1|CF309314
genomic: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAGgtatgccaca ... taaattgcagGTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAA
EST: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAG GTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAAEST: gi|84117216|gb|CD150983.1|CD150983
genomic: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAGgtatgccaca ... taaattgcagGTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAA
EST: ATTGGGTGAGAGAATATGCAAGGTTATGTGGTGGAATTGCAATCATTCAG GTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAAEST: gi|58689718|gb|CK078405.1|CK078405
genomic: ATTGGGTGAGAGAATA-GCAAGGTTATGTGGTGGAATTGCAATCATTCAGgtatgccaca ... taaattgcagGTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAA
EST: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAG GTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAAEST: gi|29668896|gb|CB665171.1|CB665171
genomic: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAGgtatgccaca ... taaattgcagGTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAA
EST: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAG GTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAAEST: gi|58691639|gb|CK080326.1|CK080326
genomic: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAGgtatgccaca ... taaattgcagGTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAA
EST: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAG GTCGGTGCTCAAACAATCATTG
genomic: TATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAGgtatgccaca ... taaattgcagGTCGGTGCTCAAACAATCATTG
tgcttgtactgttggaataccagattttgaaattttagtgcaaaataaattgcagGTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAAGATGCCCTTAATGCAACAAAG
attttgaaattttagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccacacatgctctcggtgcactaagaagagaaaatgttgctgctagtgcttgtactgttggaataccagattttgaaattttagtgcaaaataaattgcagGTCGGTGCTCAAACAATCATTGAGATGAAAGACAAGAAGCTCAGAATTGAAGATGCCCTTAATGCAACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG