1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtaccttgcgtttttggccagcatttgctgatttcatatcaacataacttcacatgtttttcttaaacacatgatattgtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTAGACTGGACGCACAGCAGAAGAAGCTCAACCTTCCAGTCCTTCCTACAA
species | Oryza sativa |
transcript | LOC_Os12g42876.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|58609313|gb|CK037346.1|CK037346
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGACGTGCTACCAATGTTAGCGCTEST: gi|58673851|gb|CK062537.1|CK062537
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|58662936|gb|CK051622.1|CK051622
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|58612165|gb|CK039877.1|CK039877
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: ATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|58690410|gb|CK079097.1|CK079097
genomic: ATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGEST: gi|58596819|gb|CK007347.1|CK007347
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCG
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|87005429|gb|CI285651.1|CI285651
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|58662664|gb|CK051350.1|CK051350
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|58676506|gb|CK065193.1|CK065193
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|58609090|gb|CK037123.1|CK037123
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|29631217|gb|CB636226.1|CB636226
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCAEST: gi|58611937|gb|CK039649.1|CK039649
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCA
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|58655240|gb|CK043920.1|CK043920
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAGGGGGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|58678604|gb|CK067291.1|CK067291
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|58657451|gb|CK046131.1|CK046131
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|58589970|gb|CF988278.1|CF988278
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|29684723|gb|CB680998.1|CB680998
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|88330001|gb|CI652391.1|CI652391
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|29638193|gb|CB643202.1|CB643202
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTEST: gi|58671943|gb|CK060629.1|CK060629
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT GCTGCTGCTCTGAAGGGG
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gtttgtgaagGCTGCTGCTCTGAAGGGG
tcatatcaacataacttcacatgtttttcttaaacacatgatattgtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTAGACTGGACGCACAGCAGAAGAAGCTCAACCTTCCAGTCCTTCCTACAA
acataac putative branch site (score: 227)
atgtttttcttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaccttgcgtttttggccagcatttgctgatttcatatcaacataacttcacatgtttttcttaaacacatgatattgtttgtgaagGCTGCTGCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTAGACTGGACGCACAGCAGAAGAAGCTCAACCTTCCAGTCCTTCCTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
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