1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgacatatcctcaataggcttggcataagatatggtcagtttatcttgtttctttttaattgtaacttccaatgctaaactattttttcttatttgtagACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAGTGGCGCAATCTGGTTCTTCGTCATCCCTCTTTGCTGAAGAACATGACTC
species | Oryza sativa |
transcript | LOC_Os12g40510.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATAATCGATAAN ACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAGEST: gi|29675928|gb|CB672203.1|CB672203
genomic: ATAATCGATAAGgtatgttacg ... ttatttgtagACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAG
EST: AGTCTGGAATGAATCTTTCTGATGAAATTATAGAGAGCATAATCGATAAG ACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAGEST: gi|300215900|gb|HO088526.1|HO088526
genomic: AGTCTGGAATGAATCTTTCTGATGAAATTATAGAGAGCATAATCGATAAGgtatgttacg ... ttatttgtagACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAG
EST: AGTCTGGAATGAATCTTTCTGATGAAATTATAGAGAGCATAATCGATAAG ACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAGEST: gi|25800868|gb|CA756829.1|CA756829
genomic: AGTCTGGAATGAATCTTTCTGATGAAATTATAGAGAGCATAATCGATAAGgtatgttacg ... ttatttgtagACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAG
EST: AGTCTGGAATGAATCTTTCTGATGAAATTATAGAGAGCATAATCGATAAG ACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAGEST: gi|29680333|gb|CB676608.1|CB676608
genomic: AGTCTGGAATGAATCTTTCTGATGAAATTATAGAGAGCATAATCGATAAGgtatgttacg ... ttatttgtagACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAG
EST: AGTCTGGAATGAATCTTTCTGATGAAATTATAGAGAGCATAATCGATAAG ACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAGEST: gi|86487223|gb|CI129856.1|CI129856
genomic: AGTCTGGAATGAATCTTTCTGATGAAATTATAGAGAGCATAATCGATAAGgtatgttacg ... ttatttgtagACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAG
EST: AGTCTGGAATGAATCTTTCTGATGAAATTATAGAGAGCATAATCGATAAG ACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAGEST: gi|29673880|gb|CB670155.1|CB670155
genomic: AGTCTGGAATGAATCTTTCTGATGAAATTATAGAGAGCATAATCGATAAGgtatgttacg ... ttatttgtagACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAG
EST: AGTCTGGAATGAATCTTTCTGATGAAATTATAGAGAGCATAATCGATAAG ACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAG
genomic: AGTCTGGAATGAATCTTTCTGATGAAATTATAGAGAGCATAATCGATAAGgtatgttacg ... ttatttgtagACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAG
cttgtttctttttaattgtaacttccaatgctaaactattttttcttatttgtagACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAGTGGCGCAATCTGGTTCTTCGTCATCCCTCTTTGCTGAAGAACATGACTC
tgctaaa putative branch site (score: 37)
ctattttttcttattt CT-rich tract
taaactattttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgacatatcctcaataggcttggcataagatatggtcagtttatcttgtttctttttaattgtaacttccaatgctaaactattttttcttatttgtagACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAGTGGCGCAATCTGGTTCTTCGTCATCCCTCTTTGCTGAAGAACATGACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - -tggcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgctaa