1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acaaactgtaggtgcaacaagcaatatttataactggctacaatgtaaggacttactattatccgtggttgtcttacctatcagttacaacttgtttcagATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGACGAACTATCAACATGATAAAAAAACAAAACAAAGATTTACATGATCTTA
species | Oryza sativa |
transcript | LOC_Os12g32230.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGATATTGCTAAGACAGCAAATAGACCTATGATTCACATTGGTGGCTGAG ATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGAEST: gi|58692671|gb|CK081358.1|CK081358
genomic: TGATATTGCTAAGACAGCAAATAGACCTATGATTCACATTGGTGGCTGAGgtatcttctt ... cttgtttcagATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGA
EST: TGATATTGCTAAGACAGCAAATAGACCTATGATTCACATTGGTGGCTGAG ATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGAEST: gi|89166490|gb|CI103776.1|CI103776
genomic: TGATATTGCTAAGACAGCAAATAGACCTATGATTCACATTGGTGGCTGAGgtatcttctt ... cttgtttcagATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGA
EST: TGATATTGCTAAGACAGCAAATAGACCTATGATTCACATTGGTGGCTGAG ATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGAEST: gi|29671509|gb|CB667784.1|CB667784
genomic: TGATATTGCTAAGACAGCAAATAGACCTATGATTCACATTGGTGGCTGAGgtatcttctt ... cttgtttcagATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGA
EST: TGATATTGCTAAGACAGCAAATAGACCTATGATTCACATTGGTGGCTGAG ATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGAEST: gi|89163717|gb|CI100607.1|CI100607
genomic: TGATATTGCTAAGACAGCAAATAGACCTATGATTCACATTGGTGGCTGAGgtatcttctt ... cttgtttcagATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGA
EST: TGATATTGCTAAGACAGCAAATAGACCTATGATTCACATTGGTGGCTGAG ATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGAEST: gi|29639063|gb|CB644072.1|CB644072
genomic: TGATATTGCTAAGACAGCAAATAGACCTATGATTCACATTGGTGGCTGAGgtatcttctt ... cttgtttcagATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGA
EST: TGATATTGCTAAGACAGCAAATAGACCTATGATTCACATTGGTGGCTGAG ATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGAEST: gi|88223338|gb|CI223187.1|CI223187
genomic: TGATATTGCTAAGACAGCAAATAGACCTATGATTCACATTGGTGGCTGAGgtatcttctt ... cttgtttcagATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGA
EST: TGATATTGCTAAGACAGCAAATAGACCTATGATTCACATTGGTGGCTGAG ATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGAEST: gi|218504356|gb|FG958785.1|FG958785
genomic: TGATATTGCTAAGACAGCAAATAGACCTATGATTCACATTGGTGGCTGAGgtatcttctt ... cttgtttcagATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGA
EST: TGATATTGCTAAGACAGCAAATAGACCTATGATTCACATTGGTGGCTGAG ATCAGTTTTACCAGCTGAAAGTAC
genomic: TGATATTGCTAAGACAGCAAATAGACCTATGATTCACATTGGTGGCTGAGgtatcttctt ... cttgtttcagATCAGTTTTACCAGCTGAAAGTAC
taaggacttactattatccgtggttgtcttacctatcagttacaacttgtttcagATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGACGAACTATCAACATGATAAAAAAACAAAACAAAGATTTACATGATCTTA
cttgtttc CT-rich tract
ttactattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaactgtaggtgcaacaagcaatatttataactggctacaatgtaaggacttactattatccgtggttgtcttacctatcagttacaacttgtttcagATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGACGAACTATCAACATGATAAAAAAACAAAACAAAGATTTACATGATCTTA
acaaact
- - - - - - - caacaag
- - - - - - - - - - - - - - - - - tggctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggttg