1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgaggatgcatttatctcattttctcatatttgccgaaagaaaaaaaatataaccattgatgcgggtattacttttccaagtggaaattttatttacatctgcaaattcaaattaattaaattagtgagaatgtgtacaatttacctgatattctgattcttttgtgaagGTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGGACCGATATTAGGTGGGCTTGTGGGACTGAAGAAGCCGAACAACCATGGC
species | Oryza sativa |
transcript | LOC_Os12g26290.5 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGTGCAAATTG GTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGGEST: gi|29620985|gb|CB625996.1|CB625996
genomic: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGCGCAAATTGgtgaggatgc ... ttttgtgaagGTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGG
EST: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGTGCAAATTG GTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGGEST: gi|29613656|gb|CB618669.1|CB618669
genomic: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGCGCAAATTGgtgaggatgc ... ttttgtgaagGTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGG
EST: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGTGCAAATTG GTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGGEST: gi|29613620|gb|CB618633.1|CB618633
genomic: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGCGCAAATTGgtgaggatgc ... ttttgtgaagGTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGG
EST: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGTGCAAATTG GTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGGEST: gi|58585656|gb|CF983964.1|CF983964
genomic: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGCGCAAATTGgtgaggatgc ... ttttgtgaagGTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGG
EST: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGCGCAAATTG GTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGGEST: gi|29620729|gb|CB625740.1|CB625740
genomic: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGCGCAAATTGgtgaggatgc ... ttttgtgaagGTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGG
EST: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGTGCAAATTG GTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGGEST: gi|66924965|gb|CX111813.1|CX111813
genomic: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGCGCAAATTGgtgaggatgc ... ttttgtgaagGTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGG
EST: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGCGCAAATTG GTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGGEST: gi|29613584|gb|CB618597.1|CB618597
genomic: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGCGCAAATTGgtgaggatgc ... ttttgtgaagGTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGG
EST: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGTGCAAATTG GTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGGEST: gi|29677261|gb|CB673536.1|CB673536
genomic: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGCGCAAATTGgtgaggatgc ... ttttgtgaagGTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGG
EST: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGCGCAAATTG GTATGGATTATTGGGTAAGAAAATAAA-GACACATTTGGTCACAEST: gi|29612897|gb|CB617910.1|CB617910
genomic: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGCGCAAATTGgtgaggatgc ... ttttgtgaagGTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACA
EST: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGTGCAAATTG GTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGGEST: gi|29629207|gb|CB634218.1|CB634218
genomic: GTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGCGCAAATTGgtgaggatgc ... ttttgtgaagGTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGG
EST: TCGAGCTTCTCAAGACAAAAACCATGAGAGCTGNCA-TGCGCGCAAATTG GTATGGATTATTGGGT
genomic: TCGAGCTTCTCAAGACAAAAACCATGAGAGCTG-CAATGCGCGCAAATTGgtgaggatgc ... ttttgtgaagGTATGGATTATTGGGT
attaaattagtgagaatgtgtacaatttacctgatattctgattcttttgtgaagGTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGGACCGATATTAGGTGGGCTTGTGGGACTGAAGAAGCCGAACAACCATGGC
ttctgat putative branch site (score: 3)
ttcttttgt CT-rich tract
tacaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggatgcatttatctcattttctcatatttgccgaaagaaaaaaaatataaccattgatgcgggtattacttttccaagtggaaattttatttacatctgcaaattcaaattaattaaattagtgagaatgtgtacaatttacctgatattctgattcttttgtgaagGTATGGATTATTGGGTAAGAAAATAAAAGACACATTTGGTCACATAGGAGGACCGATATTAGGTGGGCTTGTGGGACTGAAGAAGCCGAACAACCATGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC