1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggcatgtagtagcatgtcctactgctgcaaaggtcattcggtggtggcatgtttactgggatccctggcacttcttacctgaaactgttcaattttgcagGCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGATGACGACGACAGCTACCGCTACATTGGCGGTTACTGGGAAGCAAGGGAGA
species | Oryza sativa |
transcript | LOC_Os12g18770.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGAGATGGCTAATGCAGAGAAACTTAGGCTTGAACAACTGCAGCGACAG GCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGATEST: gi|86827296|gb|CI270951.1|CI270951
genomic: ATGAGATGGCTAATGCAGAGAAACTTAGGCTTGAACAACTGCAGCGACAGgtattccaac ... aattttgcagGCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGAT
EST: ATGAGATGGCTAATGCAGAGAAACTTAGGCTTGAACAACTGCAGCGACAG GCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGATEST: gi|88346091|gb|CI633964.1|CI633964
genomic: ATGAGATGGCTAATGCAGAGAAACTTAGGCTTGAACAACTGCAGCGACAGgtattccaac ... aattttgcagGCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGAT
EST: ATGAGATGGCTAATGCAGAGAAACTTAGGCTTGAACAACTGCAGCGACAG GCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGATEST: gi|86482724|gb|CI125357.1|CI125357
genomic: ATGAGATGGCTAATGCAGAGAAACTTAGGCTTGAACAACTGCAGCGACAGgtattccaac ... aattttgcagGCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGAT
EST: ATGAGATGGCTAATGCAGAGAAACTTAGGCTTGAACAACTGCAGCGACAG GCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGATEST: gi|88327750|gb|CI657794.1|CI657794
genomic: ATGAGATGGCTAATGCAGAGAAACTTAGGCTTGAACAACTGCAGCGACAGgtattccaac ... aattttgcagGCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGAT
EST: ATGAGATGGCTAATGCAGAGAAACTTAGGCTTGAACAACTGCAGCGACAG GCCCGAAGGTCACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGATEST: gi|86481426|gb|CI124059.1|CI124059
genomic: ATGAGATGGCTAATGCAGAGAAACTTAGGCTTGAACAACTGCAGCGACAGgtattccaac ... aattttgcagGCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGAT
EST: ATGAGATGGCTAATGCAGAGAAACTTAGGCTTGAACAACTGCAGCGACAG GCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGATEST: gi|8859285|gb|AU096603.1|AU096603
genomic: ATGAGATGGCTAATGCAGAGAAACTTAGGCTTGAACAACTGCAGCGACAGgtattccaac ... aattttgcagGCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGAT
EST: ATGAGATGGCTAATGCAGAGAAACTTAGGCTTGAACAACTGCAGCGACAG GCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGAT
genomic: ATGAGATGGCTAATGCAGAGAAACTTAGGCTTGAACAACTGCAGCGACAGgtattccaac ... aattttgcagGCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGAT
ggcatgtttactgggatccctggcacttcttacctgaaactgttcaattttgcagGCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGATGACGACGACAGCTACCGCTACATTGGCGGTTACTGGGAAGCAAGGGAGA
ttcttac putative branch site (score: 13)
ttcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcatgtagtagcatgtcctactgctgcaaaggtcattcggtggtggcatgtttactgggatccctggcacttcttacctgaaactgttcaattttgcagGCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGATGACGACGACAGCTACCGCTACATTGGCGGTTACTGGGAAGCAAGGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
ggcatgt
-gcatgta
- - - - - - catgtcc
- - - - - - - - - - - tgctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccctgg