1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cgttaaatcttttctagttaatatcttagctaatgggctaacttttgattcattacaactggaatcccatgaagactaactgatttaaaaatgcctacagGTACCGAGGGAAGAGAATGCGAATTGACTATTTCCTTGTTTCAGAAAAACTGAAGGACCAAATAGTTTCATGTGACATTCATGGTCGTGGAATAGAGCTA
species | Oryza sativa |
transcript | LOC_Os12g18200.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGAAGGACATGGATTGTGGCTTTTCTTGGTCTGGACATCCAATTGGCAA GTACCGAGGGAAGAGAATGCGAATTGACTATTTCCTTGTTTCAGAAAAACTEST: gi|25803541|gb|CA759502.1|CA759502
genomic: GAGAAGGACATGGATTGTGGCTTTTCTTGGTCTGGACATCCAATTGGCAAgtaagaaaga ... atgcctacagGTACCGAGGGAAGAGAATGCGAATTGACTATTTCCTTGTTTCAGAAAAACT
EST: GAGAAGGACATGGATTGTGGCTTTTCTTGGTCTGGACATCCAATTGGCAA GTACCGAGGGAAGAGAATGCGAATTGACTATTTCCTTGTTTCAGAAAAACTEST: gi|88223756|gb|CI223605.1|CI223605
genomic: GAGAAGGACATGGATTGTGGCTTTTCTTGGTCTGGACATCCAATTGGCAAgtaagaaaga ... atgcctacagGTACCGAGGGAAGAGAATGCGAATTGACTATTTCCTTGTTTCAGAAAAACT
EST: GAGAAGGACATGGATTGTGGCTTTTCTTGGTCTGGACATCCAATTGGCAA GTACCGAGGGAAGAGAATGCGAATTGACTATTTCCTTGTTTCAGAAAAACTEST: gi|27547884|gb|CA765936.2|CA765936
genomic: GAGAAGGACATGGATTGTGGCTTTTCTTGGTCTGGACATCCAATTGGCAAgtaagaaaga ... atgcctacagGTACCGAGGGAAGAGAATGCGAATTGACTATTTCCTTGTTTCAGAAAAACT
EST: GAGAAGGACATGGATTGTGGCTTTTCTTGGTCTGGACATCCAATTGGCAA GTACCGAGGGAAGAGAATGCGAATTGACTATTTCCTTGTTTCAGAAAAACTEST: gi|86494667|gb|CI137300.1|CI137300
genomic: GAGAAGGACATGGATTGTGGCTTTTCTTGGTCTGGACATCCAATTGGCAAgtaagaaaga ... atgcctacagGTACCGAGGGAAGAGAATGCGAATTGACTATTTCCTTGTTTCAGAAAAACT
EST: GAGAAGGACATGGATTGTGGCTTTTCTTGGTCTGGACATCCAATTGGCAA GTACCGAGGGAAGAGAATGCGAATTGACTATTTCCTTGTTTCAGAAAAACT
genomic: GAGAAGGACATGGATTGTGGCTTTTCTTGGTCTGGACATCCAATTGGCAAgtaagaaaga ... atgcctacagGTACCGAGGGAAGAGAATGCGAATTGACTATTTCCTTGTTTCAGAAAAACT
tgattcattacaactggaatcccatgaagactaactgatttaaaaatgcctacagGTACCGAGGGAAGAGAATGCGAATTGACTATTTCCTTGTTTCAGAAAAACTGAAGGACCAAATAGTTTCATGTGACATTCATGGTCGTGGAATAGAGCTA
taactgatttaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgttaaatcttttctagttaatatcttagctaatgggctaacttttgattcattacaactggaatcccatgaagactaactgatttaaaaatgcctacagGTACCGAGGGAAGAGAATGCGAATTGACTATTTCCTTGTTTCAGAAAAACTGAAGGACCAAATAGTTTCATGTGACATTCATGGTCGTGGAATAGAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - gctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccatg