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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatatgtacttctgcacacaatttcaaacagactctactttggaatatgattgaatggactaaacaccatttacacaattctatgtattcaaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG

Basic information

species Oryza sativa
transcript LOC_Os12g15470.3
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29659836|gb|CB656111.1|CB656111
EST:     TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAG                         GAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
genomic: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAGgtaagtccac ... caaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
EST: gi|117240321|gb|CT842747.1|CT842747
EST:     TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAG                         GAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
genomic: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAGgtaagtccac ... caaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
EST: gi|29668081|gb|CB664356.1|CB664356
EST:     TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAG                         GAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
genomic: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAGgtaagtccac ... caaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
EST: gi|33801783|gb|CF326764.1|CF326764
EST:     TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAG                         GAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
genomic: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAGgtaagtccac ... caaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
EST: gi|88399116|gb|CI603783.1|CI603783
EST:     TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAG                         GAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
genomic: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAGgtaagtccac ... caaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
EST: gi|86905526|gb|CI285489.1|CI285489
EST:     TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAG                         GAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
genomic: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAGgtaagtccac ... caaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
EST: gi|4715276|gb|AU056393.1|AU056393
EST:     TGTGCCATTTGCTCATGGGAATGGCTCTAATTTCAGACGATATATACCAG                         GGAAGCTCAGACTGCATGCCACGGGNAACTACTGGAATACTACCACTGGAT
genomic: TGTGCCATTTGCTCATGG-AATGGCTCTAATTTCAGACGATATATACCAGgtaagtccac ... caaaattcagG-AAGCTCAGACTGCATGCCACGGA-AACTACTGGAATACTACCACTG-AT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgattgaatggactaaacaccatttacacaattctatgtattcaaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG
             gactaaa  putative branch site (score: 2)
                                     tatgtattcaaaatt  TA-rich tract