1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atatatgtacttctgcacacaatttcaaacagactctactttggaatatgattgaatggactaaacaccatttacacaattctatgtattcaaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG
species | Oryza sativa |
transcript | LOC_Os12g15470.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAG GAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAAEST: gi|29659836|gb|CB656111.1|CB656111
genomic: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAGgtaagtccac ... caaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
EST: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAG GAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAAEST: gi|33684071|gb|CF312310.1|CF312310
genomic: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAGgtaagtccac ... caaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
EST: TCAGACGATATATACCAG GAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAAEST: gi|29668081|gb|CB664356.1|CB664356
genomic: TCAGACGATATATACCAGgtaagtccac ... caaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
EST: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAG GAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAAEST: gi|29661783|gb|CB658058.1|CB658058
genomic: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAGgtaagtccac ... caaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
EST: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAG GAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAAEST: gi|33801783|gb|CF326764.1|CF326764
genomic: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAGgtaagtccac ... caaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
EST: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAG GAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAAEST: gi|88399116|gb|CI603783.1|CI603783
genomic: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAGgtaagtccac ... caaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
EST: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAG GAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAAEST: gi|86905526|gb|CI285489.1|CI285489
genomic: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAGgtaagtccac ... caaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
EST: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAG GAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAAEST: gi|4715276|gb|AU056393.1|AU056393
genomic: TTGTGCCATTTGCTCATGGAATGGCTCTAATTTCAGACGATATATACCAGgtaagtccac ... caaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAA
EST: TGTGCCATTTGCTCATGGGAATGGCTCTAATTTCAGACGATATATACCAG GGAAGCTCAGACTGCATGCCACGGGNAACTACTGGAATACTACCACTGGAT
genomic: TGTGCCATTTGCTCATGG-AATGGCTCTAATTTCAGACGATATATACCAGgtaagtccac ... caaaattcagG-AAGCTCAGACTGCATGCCACGGA-AACTACTGGAATACTACCACTG-AT
atatgattgaatggactaaacaccatttacacaattctatgtattcaaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG
gactaaa putative branch site (score: 17)
tatgtattcaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatatgtacttctgcacacaatttcaaacagactctactttggaatatgattgaatggactaaacaccatttacacaattctatgtattcaaaattcagGAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG
- atatgta
- - - - -cttctgc
- - - - - - - - acacaat
- - - - - - - - - - - - tcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtat