1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgttgttaatgttctgcttttatttactatgtcaactcatcttttatcaaagtagacaattgaagtatatgtttattgttatgcagGAGTTGTCTGAACATCTTGGTATTCGTCTACTCAACGAGAAACTGAATGATCCCAACATGCAAGATTCATTTGATTCAATATTCCCAAAGGATCATCCAA
species | Oryza sativa |
transcript | LOC_Os12g15420.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGGAGGACACAACGTCTTCATCTCGAATTTTCATTAAAATACTCTTCCAG GAGTTGTCTGAACATCTTGGTATTCGTCTACTCAACGAGAAACTGAATGATEST: gi|86839558|gb|CI339466.1|CI339466
genomic: AGGAGGACACAACGTCTTCATCTCGAATTTTCATTAAAATACTCTTCCAGgtatgttgtt ... tgttatgcagGAGTTGTCTGAACATCTTGGTATTCGTCTACTCAACGAGAAACTGAATGAT
EST: AGGAGGACACAACGTCTTCATCTCGAATTTTCATTAAAATACTCTTCCAG GAGTTGTCTGAACATCTTGGTATTCGTCTACTCAACGAGAAACTGAATGATEST: gi|66914369|gb|CX101217.1|CX101217
genomic: AGGAGGACACAACGTCTTCATCTCGAATTTTCATTAAAATACTCTTCCAGgtatgttgtt ... tgttatgcagGAGTTGTCTGAACATCTTGGTATTCGTCTACTCAACGAGAAACTGAATGAT
EST: AGGAGGACACAACGTCTTCATCTCGAATATTCATTAAAATACTCTTCCAG GAGTTGTCTGAACATCTTGGTATTCGTCTACTCAACGAGAAACTGAATGATEST: gi|29672968|gb|CB669243.1|CB669243
genomic: AGGAGGACACAACGTCTTCATCTCGAATTTTCATTAAAATACTCTTCCAGgtatgttgtt ... tgttatgcagGAGTTGTCTGAACATCTTGGTATTCGTCTACTCAACGAGAAACTGAATGAT
EST: AATTTTCATTAAAATACTCTTCCAG GAGTTGTCTGAACATCTTGGTATTCGTCTACTCAACGAGAAACTGAATGATEST: gi|218485858|gb|FG956444.1|FG956444
genomic: AATTTTCATTAAAATACTCTTCCAGgtatgttgtt ... tgttatgcagGAGTTGTCTGAACATCTTGGTATTCGTCTACTCAACGAGAAACTGAATGAT
EST: AGGAGGACACAACGTCTTCATCTCGAATTTTCATTAAAATACTCTTCCAG GAGTTGTCTGAACATCTTGGTATTCGTCTACTCAACGAGAAACTGAATGATEST: gi|29660521|gb|CB656796.1|CB656796
genomic: AGGAGGACACAACGTCTTCATCTCGAATTTTCATTAAAATACTCTTCCAGgtatgttgtt ... tgttatgcagGAGTTGTCTGAACATCTTGGTATTCGTCTACTCAACGAGAAACTGAATGAT
EST: AGGAGGACACAACGTCTTCATCTCGAATTTTCATTAAAATACTCTTCCAG GAGTTGTCTGAACATCTTGGTATTCGTCTACTCAACGAGAAACTGAATGAT
genomic: AGGAGGACACAACGTCTTCATCTCGAATTTTCATTAAAATACTCTTCCAGgtatgttgtt ... tgttatgcagGAGTTGTCTGAACATCTTGGTATTCGTCTACTCAACGAGAAACTGAATGAT
tcaactcatcttttatcaaagtagacaattgaagtatatgtttattgttatgcagGAGTTGTCTGAACATCTTGGTATTCGTCTACTCAACGAGAAACTGAATGATCCCAACATGCAAGATTCATTTGATTCAATATTCCCAAAGGATCATCCAA
tatatgtttattgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgttaatgttctgcttttatttactatgtcaactcatcttttatcaaagtagacaattgaagtatatgtttattgttatgcagGAGTTGTCTGAACATCTTGGTATTCGTCTACTCAACGAGAAACTGAATGATCCCAACATGCAAGATTCATTTGATTCAATATTCCCAAAGGATCATCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA