1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtttgtgcattgtcaccttagccaacaacaacaatcttgttttagaaacttcttgtgtcggtaaaagaatttctgcttctattgcagTGGGGAAAGTGGAAGTGAAAGTTCTAGTGAAGGAAGTGAAGCAAATTCTCAGAAT
species | Oryza sativa |
transcript | LOC_Os12g13170.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAACATGGTAAAACCTCTGGGGCATCAGCTAATGGAGCCATTTCTCAAAG TGGGGAAAGTGGAAGTGAAAGTTCTAGTGAAGGAAGTGAAGCAAATTCTCAEST: gi|86879567|gb|CI327191.1|CI327191
genomic: GAACATGGTAAAACCTCTGGGGCATCAGCTAATGGAGCCATTTCTCAAAGgtttgtgcat ... tctattgcagTGGGGAAAGTGGAAGTGAAAGTTCTAGTGAAGGAAGTGAAGCAAATTCTCA
EST: TAACATGGTAAAACCTCTGGGGCATCAGCTAATGGAGCCATTTCTCAAAG TGGGGAAAGGTGGAAGTGAAAGTTCTAGTGAAGGAAGTGAAGCAAATTCTC
genomic: GAACATGGTAAAACCTCTGGGGCATCAGCTAATGGAGCCATTTCTCAAAGgtttgtgcat ... tctattgcagTGGGGAAA-GTGGAAGTGAAAGTTCTAGTGAAGGAAGTGAAGCAAATTCTC
aatcttgttttagaaacttcttgtgtcggtaaaagaatttctgcttctattgcagTGGGGAAAGTGGAAGTGAAAGTTCTAGTGAAGGAAGTGAAGCAAATTCTCAGAAT
tttctgcttctatt CT-rich tract
taaaagaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgcattgtcaccttagccaacaacaacaatcttgttttagaaacttcttgtgtcggtaaaagaatttctgcttctattgcagTGGGGAAAGTGGAAGTGAAAGTTCTAGTGAAGGAAGTGAAGCAAATTCTCAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA