1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catcggtttcctgaaaatttgtgttatatgtatcttttcatatcctctattcacaacagtaggctcactttgttgtttattgcacatgtgaactatccagGTGGCTAAGAATTTTGTAGAATCTGCTCTTCATCACAGTAAAGATCTTGTCGTTGGAAATGGACCTCAAGGCCCTTTTGATCACCTTTTCAAGCTCAAGT
species | Oryza sativa |
transcript | LOC_Os12g09000.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTATAGCTTCCGAATTAGCGAAAGGTGCAACGATGCTGCATGCTGTTCAG GTGGCTAAGAATTTTGTAGAATCTGCTCTTCATCACAGTAAAGATCTTGTCEST: gi|33681240|gb|CF309479.1|CF309479
genomic: GTATAGCTTCCGAATTAGCGAAAGGTGCAACGATGCTGCATGCTGTTCAGgttagtcttc ... aactatccagGTGGCTAAGAATTTTGTAGAATCTGCTCTTCATCACAGTAAAGATCTTGTC
EST: GTATAGCTTCCGAATTAGCGAAAGGTGCAACGATGCTGCATGCTGTTCAG GTGGCTAAGAATTTTGTAGAATCTGCTCTTCATCACAGTAAAGATCTTGTC
genomic: GTATAGCTTCCGAATTAGCGAAAGGTGCAACGATGCTGCATGCTGTTCAGgttagtcttc ... aactatccagGTGGCTAAGAATTTTGTAGAATCTGCTCTTCATCACAGTAAAGATCTTGTC
tctattcacaacagtaggctcactttgttgtttattgcacatgtgaactatccagGTGGCTAAGAATTTTGTAGAATCTGCTCTTCATCACAGTAAAGATCTTGTCGTTGGAAATGGACCTCAAGGCCCTTTTGATCACCTTTTCAAGCTCAAGT
ggctcac putative branch site (score: 13)
ttgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcggtttcctgaaaatttgtgttatatgtatcttttcatatcctctattcacaacagtaggctcactttgttgtttattgcacatgtgaactatccagGTGGCTAAGAATTTTGTAGAATCTGCTCTTCATCACAGTAAAGATCTTGTCGTTGGAAATGGACCTCAAGGCCCTTTTGATCACCTTTTCAAGCTCAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - tcctgaa
- - - - - - - - - ttgtgtt
- - - - - - - - - - - - - tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatgt