Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacaattcctatcattttctagcgtcacaatgaatagactagcttgcagcatattcaaagagaaattaatgttgcaaacctgatgtcattgctgtgctattggtgaactgtgaacagATACATGGTGGTGGTGAGAATGGCCCGCTTCTGAAAGATTACTTTGAAGGTGGTGCTACTTGGGCTTTTGATGTTGGCAGTCAATCTATGACATGCCCAA

Basic information

species Oryza sativa
transcript LOC_Os12g06335.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g06330.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G031656_T02 (Zea mays), 3'ss of exon 8
gtatacaattcctatcattttctagcgtcacaatgaatagactagcttgcagcatattcaaagagaaattaatgttgcaaacctgatgtcattgctgtgctattggtgaactgtgaacagATACATGGTGGTGGTGAGAATGGCCCGCTTCTGAAAGATTACTTTGAAGGTGGTGCTACTTGGGCTTTTGATGTTGGCAGTCAATCTATGACATGCCCAA------
         |||    | ||  ||   |  | ||        ||  ||||||| | ||  |  ||  | ||  ||| | ||||| ||         |   ||| | | ||||   ||||||| | ||||||||   ||||||| ||     | ||||| ||||| ||||||||||| |||||||| ||||||||||| |||||||||||||| || ||||      
------gtgtccacatacttattaattttgccat-------ttaatttgcagcctttttgagaaggcaata--gttactaacctcat---------gcagtatggataaactccaaacagATTCTTGGTGGTG---AGAATGGTCCAT---TAAAAGACTACTTCGAAGGTGGTGCGACTTGGGCCTTTGATGTTGGTAGTCAATCTATGACGTGTCCAATCATTG

upper sequence: LOC_Os12g06330.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G069408_T01 (Zea mays), 3'ss of exon 7
gtatacaattcctatcattttctagcgtcacaatgaatagactagcttgcagcatattcaaagagaaattaatgttgcaaacctgatgtcat-tgctgtg---ctattggtgaactgtgaacagATACATGGTGGTGGTGAGAATGGCCCGCTTCTGAAAGATTACTTTGAAGGTGGTGCTACTTGGGCTTTTGATGTTGGCAGTCAATCTATGACATGCCCAA------
                      || | |    | | |  || ||  ||||||| | ||  |  ||  | ||  ||| | ||||| |||  ||  | ||||   |||| ||| ||||   ||||||| | ||||||||   ||||||| || ||    ||||| ||||| ||||||||||| |||||||| || |||||||| |||| ||||||||| |||||||      
---------------------atatc-ttgggacggagggagtaatttgcagcctttttgagaaggtaata--gttactaacctcatgcaatgcgttgtgtggctatgggtaaactccaaacagATTCTTGGTGGTG---AGAATGGTCCACTC---AAAGACTACTTCGAAGGTGGTGCAACTTGGGCCTTGGATGTTGGTAGTCGATCTATGACGTGCCCAATCATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|44672670|gb|CR286104.1|CR286104
EST:     AAAGTGTGACGAAGCATGCAGACAACCTCAAGGATTCTAACGAATCAAAG                         ATACATGGTGGTGGTGAGAATGGCCCGCTTCTGAAAGATTACTTTGAAGGT
genomic: AAAGTGTGACGAAGCATGCAGACAACCTCAAGGATTCTAACGAATCAAAGgtatacaatt ... ctgtgaacagATACATGGTGGTGGTGAGAATGGCCCGCTTCTGAAAGATTACTTTGAAGGT
EST: gi|58602076|gb|CK012604.1|CK012604
EST:     AAAGTGTGACGAAGCATGCAGACAACCTCAAGGATTCTAACGAATCCAAG                         ATACATGGTGG
genomic: AAAGTGTGACGAAGCATGCAGACAACCTCAAGGATTCTAACGAATCAAAGgtatacaatt ... ctgtgaacagATACATGGTGG