Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcacattgacaaacacatggttgaataacctttttctttatatatttttaactcttttatctcatgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCGTAGACTGCTTACTCAGCCTTTATGGAGTGTCTGGCCTTGACGAGAGTTC

Basic information

species Oryza sativa
transcript LOC_Os12g06020.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29673543|gb|CB669818.1|CB669818
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|86426622|gb|CI071719.1|CI071719
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|94362853|gb|CI053014.1|CI053014
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|89179032|gb|CI043537.1|CI043537
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|86417936|gb|CI032145.1|CI032145
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|86425628|gb|CI070725.1|CI070725
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88989093|gb|CI042206.1|CI042206
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|29680067|gb|CB676342.1|CB676342
EST:     CTGTTATTTTGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|29639083|gb|CB644092.1|CB644092
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|29639129|gb|CB644138.1|CB644138
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88902316|gb|CI374924.1|CI374924
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88969956|gb|CI383458.1|CI383458
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGA-GCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCC
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88223517|gb|CI223366.1|CI223366
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|86498699|gb|CI141332.1|CI141332
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88990938|gb|CI108325.1|CI108325
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|86536366|gb|CI176572.1|CI176572
EST:     TGTTATTTCGAGGGATATAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAGATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGC
genomic: TGTTATTTCGAGGGATA-AAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGA-ATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGC
EST: gi|86258527|gb|CI064880.1|CI064880
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88555661|gb|CI485935.1|CI485935
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|86499687|gb|CI142320.1|CI142320
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCCAGGAGTTACAGAATGCACATGC
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATC-AGGAGTTACAGAATGCACATGC
EST: gi|88228700|gb|CI228180.1|CI228180
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88270955|gb|CI386810.1|CI386810
EST:     TCCTGAGGCTTGTTCAG                         AAGCGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGC
genomic: TCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAA-CGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGC
EST: gi|86493407|gb|CI136040.1|CI136040
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|3760451|gb|C97705.1|C97705
EST:     AAAG-TAAAGATGC-CCCCTGAGGCTTG-TCAG                         AACGACGAATTCATCAATTTGCNCTATCAGGAGTTACAGAATGCACATGCG
genomic: AAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|87016724|gb|CI275726.1|CI275726
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88262698|gb|CI366472.1|CI366472
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|89188927|gb|CI048663.1|CI048663
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|87019200|gb|CI277916.1|CI277916
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88225520|gb|CI225436.1|CI225436
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|29684687|gb|CB680962.1|CB680962
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|38482214|gb|CF966266.1|CF966266
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|86494155|gb|CI136788.1|CI136788
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88974892|gb|CI023163.1|CI023163
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88832938|gb|CI369828.1|CI369828
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88962851|gb|CI025337.1|CI025337
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|89188379|gb|CI115628.1|CI115628
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCCATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|29669201|gb|CB665476.1|CB665476
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|86499596|gb|CI142229.1|CI142229
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|218494718|gb|FG969775.1|FG969775
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88459755|gb|CI522015.1|CI522015
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|58610562|gb|CK038274.1|CK038274
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|89192061|gb|CI393418.1|CI393418
EST:     TATTTCGAGGGATAAAGTTAAATATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCCATTTGCTCTATCAGCAGTTACACAATGCACATGCG
genomic: TATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|86500223|gb|CI142856.1|CI142856
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88996265|gb|CI037556.1|CI037556
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|86425554|gb|CI070651.1|CI070651
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|86541144|gb|CI181350.1|CI181350
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|86536378|gb|CI176584.1|CI176584
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|87034958|gb|CI188761.1|CI188761
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|29676702|gb|CB672977.1|CB672977
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88850875|gb|CI096265.1|CI096265
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|89182562|gb|CI113931.1|CI113931
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88269433|gb|CI380731.1|CI380731
EST:     CTGTTATTTCGAGGGATAAAATTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|86414641|gb|CI069044.1|CI069044
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88261305|gb|CI364881.1|CI364881
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88980764|gb|CI022459.1|CI022459
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|89179057|gb|CI043562.1|CI043562
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88227352|gb|CI226832.1|CI226832
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|86494506|gb|CI137139.1|CI137139
EST:     CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: CTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
EST: gi|88246513|gb|CI246362.1|CI246362
EST:     ATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAG                         AACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG
genomic: ATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 61 (downstream exon)
Score: 39

TCCGCCGCCAACACCACCTGCATCACTTACCCCTGTACACAACGATGAGCCTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGgtatgtttca ... tgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCGTAGACTGCTTACTCAGCCTTTATGGAGTGTCTGGCCTTGACGAGAGTTC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgaataacctttttctttatatatttttaactcttttatctcatgcccaacagAACGACGAATTCATCAATTTGCTCTATCAGGAGTTACAGAATGCACATGCGTAGACTGCTTACTCAGCCTTTATGGAGTGTCTGGCCTTGACGAGAGTTC
                          ttttaac  putative branch site (score: 39)
                                ctcttttatctcat  CT-rich tract
     ataacctttttcttta  TA-rich tract