1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcaatatcacatctgatataacatgtgccttacttctctgtttgctccatatgatgttcatcatccgtcttcctcattgatattagttaaacatgtgcagCATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGTGAAGATCATCACTGACGTGAACGTTGATGTGGAATCAGCTGAGATAGAT
species | Oryza sativa |
transcript | LOC_Os12g05650.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAAGAAG CATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGTEST: gi|86255014|gb|CI017134.1|CI017134
genomic: GTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAAGAAGgtttgatcca ... acatgtgcagCATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGT
EST: TGTAATTGTTGAAGATGATGGACCTAAAAGAAG CATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGTEST: gi|86823074|gb|CI253990.1|CI253990
genomic: TGTAATTGTTGAAGATGATGGACCTAAAAGAAGgtttgatcca ... acatgtgcagCATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGT
EST: GTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAAGAAG CATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGTEST: gi|325494579|gb|JG459103.1|JG459103
genomic: GTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAAGAAGgtttgatcca ... acatgtgcagCATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGT
EST: ACACATGTAATTGTTGAAGATGATGGACCTAAAAGAAG CATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGTEST: gi|86823113|gb|CI254016.1|CI254016
genomic: ACACATGTAATTGTTGAAGATGATGGACCTAAAAGAAGgtttgatcca ... acatgtgcagCATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGT
EST: GTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAAGAAG CATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGTEST: gi|88240853|gb|CI238704.1|CI238704
genomic: GTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAAGAAGgtttgatcca ... acatgtgcagCATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGT
EST: GTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAAGAAG CATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGTEST: gi|55408732|gb|CV721108.1|CV721108
genomic: GTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAAGAAGgtttgatcca ... acatgtgcagCATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGT
EST: GTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAAGAAG CATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGTEST: gi|5900741|gb|AU078396.1|AU078396
genomic: GTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAAGAAGgtttgatcca ... acatgtgcagCATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGT
EST: GTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAAGAAG CATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGTEST: gi|86259447|gb|CI008124.1|CI008124
genomic: GTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAAGAAGgtttgatcca ... acatgtgcagCATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGT
EST: TAATTGTTGAAGATGATGGACCTAAAAGAAG CATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGTEST: gi|86251590|gb|CI016879.1|CI016879
genomic: TAATTGTTGAAGATGATGGACCTAAAAGAAGgtttgatcca ... acatgtgcagCATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGT
EST: CATGTAATTGTTGAAGATGATGGACCTAAAAGAAG CATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGT
genomic: CATGTAATTGTTGAAGATGATGGACCTAAAAGAAGgtttgatcca ... acatgtgcagCATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGT
tccatatgatgttcatcatccgtcttcctcattgatattagttaaacatgtgcagCATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGTGAAGATCATCACTGACGTGAACGTTGATGTGGAATCAGCTGAGATAGAT
cattgat putative branch site (score: 45)
attgatattagttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatatcacatctgatataacatgtgccttacttctctgtttgctccatatgatgttcatcatccgtcttcctcattgatattagttaaacatgtgcagCATGCTGTACATAGAGACAGCTGATCGGCCTGGTCTACTTCTGGAAATAGTGAAGATCATCACTGACGTGAACGTTGATGTGGAATCAGCTGAGATAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - -catctga
- - - - - - - - - - - - gtgcctt
- - - - - - - - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - atgatgt