1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...ttggtaacactgcctagcatttaatcttgaattttatcatggtatattctatggaacgaagtgtacttatgttctgcttatgtgtaactatttattgcagCTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTG
species | Oryza sativa |
transcript | LOC_Os12g04990.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACCATGCGACAGTACAAGCTATTGTCTGTGTGCCTCAAACACTAAGCACT CTACTAAGCTTTATAACEST: gi|29627108|gb|CB632119.1|CB632119
genomic: ACCATGCGACAGTACAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTACTAAGCTTTATAAC
EST: ACCATGCGACAGTACAAGCTATTTTCTGTGTGCCTCAGACACTAAGCACT CTACTAAGCTTTATAACTEST: gi|29630786|gb|CB635795.1|CB635795
genomic: ACCATGCGACAGTACAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTACTAAGCTTTATAACT
EST: ACCATGCGACAGTACAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACT CTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTGEST: gi|29627343|gb|CB632354.1|CB632354
genomic: ACCATGCGACAGTACAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTG
EST: ACCATGCGACAGTACAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACT CTACTAAGCTTTATEST: gi|29674287|gb|CB670562.1|CB670562
genomic: ACCATGCGACAGTACAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTACTAAGCTTTAT
EST: ACCATGCGACAGTACAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACT CTACTAAGCTTTATAACTCANATGCCGTGTGTTCGCCTTATAGTGGTAATEST: gi|58689916|gb|CK078603.1|CK078603
genomic: ACCATGCGACAGTACAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTGGTAAT
EST: ACCATGCGACAGTACAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACT CTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTGEST: gi|58666789|gb|CK055475.1|CK055475
genomic: ACCATGCGACAGTACAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTG
EST: ACCATGCGACAGTACAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACT CTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTGEST: gi|117224882|gb|CT845959.1|CT845959
genomic: ACCATGCGACAGTACAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTG
EST: ACCATGCGACAGTACAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACT CTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTG
genomic: ACCATGCGACAGTACAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTG
attctatggaacgaagtgtacttatgttctgcttatgtgtaactatttattgcagCTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTG
gtgtaac putative branch site (score: 17)
tgtaactatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggtaacactgcctagcatttaatcttgaattttatcatggtatattctatggaacgaagtgtacttatgttctgcttatgtgtaactatttattgcagCTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTG
- - - - - tgcctag
- - - - - - - - - - - - tcttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -gaacgaa