1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtaagttcaaaccatttatagttagtatattcaatgaacggccatgattgtttaagattctctctttttctttttttttaaaaaaaacttgtttaatatagGTAATTGGTGGAGACAATGCAAATATGCCATCTACCCCAACAGCTACTGGAGTGGAAATTATAACTTACTCCAGACTACTTAGCCAG
species | Oryza sativa |
transcript | LOC_Os12g04990.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTG GTAATTGGTGGAGACAATGCAAATATGCCATCTACCCCAACAGCTACTGGAEST: gi|58694148|gb|CK082835.1|CK082835
genomic: CTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTGgtaagttcaa ... tttaatatagGTAATTGGTGGAGACAATGCAAATATGCCATCTACCCCAACAGCTACTGGA
EST: TTCGCCTTATAGTG GTAA-TGGTGGAGACAATGCAAATATGCCATCTACCCCAACAGCTACTGGAEST: gi|58689916|gb|CK078603.1|CK078603
genomic: TTCGCCTTATAGTGgtaagttcaa ... tttaatatagGTAATTGGTGGAGACAATGCAAATATGCCATCTACCCCAACAGCTACTGGA
EST: CTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTG GTAATTGGTGGAGACAATGCAAATATGCCATCTACCCCAACAGCTACTGGAEST: gi|58666789|gb|CK055475.1|CK055475
genomic: CTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTGgtaagttcaa ... tttaatatagGTAATTGGTGGAGACAATGCAAATATGCCATCTACCCCAACAGCTACTGGA
EST: CTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTG GTAATTGGTGGAGACAATGCAAATATGCCATCTACCCCAACAGCTACTGGA
genomic: CTACTAAGCTTTATAACTCAAATGCCGTGTGTTCGCCTTATAGTGgtaagttcaa ... tttaatatagGTAATTGGTGGAGACAATGCAAATATGCCATCTACCCCAACAGCTACTGGA
attgtttaagattctctctttttctttttttttaaaaaaaacttgtttaatatagGTAATTGGTGGAGACAATGCAAATATGCCATCTACCCCAACAGCTACTGGAGTGGAAATTATAACTTACTCCAGACTACTTAGCCAG
gtttaat putative branch site (score: 4)
cttgttt CT-rich tract
tctttttctttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcaaaccatttatagttagtatattcaatgaacggccatgattgtttaagattctctctttttctttttttttaaaaaaaacttgtttaatatagGTAATTGGTGGAGACAATGCAAATATGCCATCTACCCCAACAGCTACTGGAGTGGAAATTATAACTTACTCCAGACTACTTAGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA