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gtatgagctatattttccaattgaaaatcaagttcttgatatctgcacatatatgtcagacgtgtctgggataattgacttgatttccattcaaacaattgtagGAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGGAATCTATTGGTCCATGGGAAGAGAGGCCTGGACACTTTGGGGATGTTTG
species | Oryza sativa |
transcript | LOC_Os12g03470.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG GAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGGEST: gi|29627933|gb|CB632944.1|CB632944
genomic: ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
EST: ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG GAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGGEST: gi|33677669|gb|CF305908.1|CF305908
genomic: ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
EST: ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG GAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGGEST: gi|55410431|gb|CV722807.1|CV722807
genomic: ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
EST: CTAATATCTATGATGTTGGACTTATATTCCACGATTCTTGAGATTCCCTG GAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGGEST: gi|29630007|gb|CB635016.1|CB635016
genomic: CTAATATCTATGATGTTGGACTTA-AAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
EST: ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG GAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGGEST: gi|33675310|gb|CF303549.1|CF303549
genomic: ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
EST: ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG GAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
genomic: ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
tatatgtcagacgtgtctgggataattgacttgatttccattcaaacaattgtagGAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGGAATCTATTGGTCCATGGGAAGAGAGGCCTGGACACTTTGGGGATGTTTG
ataattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgagctatattttccaattgaaaatcaagttcttgatatctgcacatatatgtcagacgtgtctgggataattgacttgatttccattcaaacaattgtagGAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGGAATCTATTGGTCCATGGGAAGAGAGGCCTGGACACTTTGGGGATGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG