1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtctaaaaatttattcattcatttgacattataacatcaatgtgtactcagtattcattccttatctgtaattacagatttcatgtttacagaaagtctactgatgcttgtgataagtgcacttactcagttgtttaattttggtagATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAG
species | Oryza sativa |
transcript | LOC_Os12g03190.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATNCAG-ACCAG ATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGEST: gi|700649|gb|D46940.1|D46940
genomic: -TTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGgtctaaaaat ... attttggtagATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAG
EST: ATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAG ATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGEST: gi|702505|gb|D48796.1|D48796
genomic: ATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGgtctaaaaat ... attttggtagATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAG
EST: ATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAG ATCCACGGTGATGATCTCAGTGGGATGGACGGAGCTAGGAAGEST: gi|6481237|gb|AU065815.2|AU065815
genomic: ATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGgtctaaaaat ... attttggtagATCCACG-TGATGATCTCAGTGGGATGGACGTAGCTAGAAAG
EST: ATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAG ATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAG
genomic: ATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGgtctaaaaat ... attttggtagATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAG
aaagtctactgatgcttgtgataagtgcacttactcagttgtttaattttggtagATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAG
agttgtttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctaaaaatttattcattcatttgacattataacatcaatgtgtactcagtattcattccttatctgtaattacagatttcatgtttacagaaagtctactgatgcttgtgataagtgcacttactcagttgtttaattttggtagATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA