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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggtcaaagatgctaggttggtcctttcacctcaaatatacaactgtaccttaatgttatgctaattttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAATATACAATTCTTTATGCTTCTCAGCCCTATGGTTTGCTAGAGAGCCCTTC

Basic information

species Oryza sativa
transcript LOC_Os12g03060.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29618674|gb|CB623686.1|CB623686
EST:     TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG                         GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: gi|29657294|gb|CB653569.1|CB653569
EST:     TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG                         GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: gi|29687248|gb|CB683523.1|CB683523
EST:     TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG                         GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: gi|163926921|gb|EG715146.1|EG715146
EST:     TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG                         GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: gi|38478567|gb|CF962700.1|CF962700
EST:     TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATTACACAAAATCCGAAG                         GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: gi|29657293|gb|CB653568.1|CB653568
EST:     TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG                         GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: gi|29618675|gb|CB623687.1|CB623687
EST:     TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG                         GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: gi|58694491|gb|CK083178.1|CK083178
EST:     TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG                         GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: gi|27576657|gb|CA999351.1|CA999351
EST:     TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG                         GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: gi|86831384|gb|CI299442.1|CI299442
EST:     TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG                         GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: gi|29686826|gb|CB683101.1|CB683101
EST:     TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAT                         GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttcacctcaaatatacaactgtaccttaatgttatgctaattttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAATATACAATTCTTTATGCTTCTCAGCCCTATGGTTTGCTAGAGAGCCCTTC
                                     tgctaat  putative branch site (score: 2)
                                           ttttttctgt  CT-rich tract
                            ttaatgttatgctaat  TA-rich tract