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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aactacagaagtcacaaatccatgatacatcaagccagagagcgcctgatgcattttactgatattcagtatactaagtatgttttacctttgtgtgcagGTGTGCCTTCTCTTGAGAGGACAGAACTGGAGGCGGCATGCGAGGGTTTCATCAATGTGATCGGCACTTTACCTGAATGCACATTGTATAAGGGAACTCT

Basic information

species Oryza sativa
transcript LOC_Os12g01510.4
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58691771|gb|CK080458.1|CK080458
EST:     GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAG                         GTGTGCCTTCTCTTGAGAGGACAGAGCTGGAGGCGGCATGCGAGGGTTTTA
genomic: GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAGgttggttttt ... ttgtgtgcagGTGTGCCTTCTCTTGAGAGGACAGAACTGGAGGCGGCATGCGAGGGTTTCA
EST: gi|58609301|gb|CK037334.1|CK037334
EST:     GCCATGGACTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAG                         GTGTGCGTTCTCTTGAGAGGACAGAACTGGAGGCGGCATGCGAGGGTTTCA
genomic: GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAGgttggttttt ... ttgtgtgcagGTGTGCCTTCTCTTGAGAGGACAGAACTGGAGGCGGCATGCGAGGGTTTCA
EST: gi|29621673|gb|CB626684.1|CB626684
EST:     GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAG                         GTGTGCCTTCTCTTGAGAGGACAGAACTGGAGGCGGCATGCGAGGGTTTCA
genomic: GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAGgttggttttt ... ttgtgtgcagGTGTGCCTTCTCTTGAGAGGACAGAACTGGAGGCGGCATGCGAGGGTTTCA
EST: gi|29623656|gb|CB628667.1|CB628667
EST:     GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAAGCATTTGTAACAG                         GTGTGCCTTCTCT
genomic: GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAGgttggttttt ... ttgtgtgcagGTGTGCCTTCTCT
EST: gi|11442867|gb|BF430766.1|BF430766
EST:     GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAG                         GTGTGCCTTCTCTTGAGAGGACAGAACTGGAGGCGGCATGCGAGGGGTTCA
genomic: GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAGgttggttttt ... ttgtgtgcagGTGTGCCTTCTCTTGAGAGGACAGAACTGGAGGCGGCATGCGAGGGTTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatgcattttactgatattcagtatactaagtatgttttacctttgtgtgcagGTGTGCCTTCTCTTGAGAGGACAGAACTGGAGGCGGCATGCGAGGGTTTCATCAATGTGATCGGCACTTTACCTGAATGCACATTGTATAAGGGAACTCT
           tactgat  putative branch site (score: 2)
                                     ttttaccttt  putative PPT
       attttactgatatt  TA-rich tract