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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgtcattgtgacagtttaatttttatttatttgtacttttttttggtgcggtgctgattgatcatctttgttattcattgacagGACGCACAAAATGCCATAAATGAACTGAATG

Basic information

species Oryza sativa
transcript LOC_Os11g40510.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688359|gb|CK077046.1|CK077046
EST:     AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|58687280|gb|CK075967.1|CK075967
EST:     AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|87006051|gb|CI289468.1|CI289468
EST:     AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|58602505|gb|CK013033.1|CK013033
EST:     AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|33680119|gb|CF308358.1|CF308358
EST:     AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|88572117|gb|CI663688.1|CI663688
EST:     AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|218497207|gb|FG946437.1|FG946437
EST:     TTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: TTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|86905007|gb|CI289154.1|CI289154
EST:     AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|88321854|gb|CI672999.1|CI672999
EST:     AAACTGGACGATCCACAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|58678674|gb|CK067361.1|CK067361
EST:     AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|58690866|gb|CK079553.1|CK079553
EST:     AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|87022688|gb|CI293578.1|CI293578
EST:     AAACTGGACGATCCAGAGGTTTNGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATGGGAAG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATGGGAAG
EST: gi|58694246|gb|CK082933.1|CK082933
EST:     AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|25797088|gb|CA753049.1|CA753049
EST:     AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|218500911|gb|FG960833.1|FG960833
EST:     AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|58597389|gb|CK007917.1|CK007917
EST:     AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|325494350|gb|JG458874.1|JG458874
EST:     GAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: GAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|58606512|gb|CK034545.1|CK034545
EST:     AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|58601763|gb|CK012291.1|CK012291
EST:     AAACTGGACGATCCAGAGGTTTAGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|86596642|gb|CI286555.1|CI286555
EST:     AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
EST: gi|87004665|gb|CI300987.1|CI300987
EST:     AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG                         GACGCACAAAATGCCATAAATGAACTGAATG
genomic: AAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcat ... tcattgacagGACGCACAAAATGCCATAAATGAACTGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtacttttttttggtgcggtgctgattgatcatctttgttattcattgacagGACGCACAAAATGCCATAAATGAACTGAATG
     actttttttt  TA-rich tract