1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaacagaggggagtctgaatttttcatattagggtgccggaacactgaaaaatactggaacacccagaaatgatgttattttcttctttgtgtttgcagTATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAGGAAGAGCTCGAGGAGAAAGCCCCCAAAGTAAAGGCCAAGTCAAAAATGT
species | Oryza sativa |
transcript | LOC_Os11g39020.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAAT TATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAGEST: gi|86869899|gb|CI316627.1|CI316627
genomic: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAATgtgagttatc ... gtgtttgcagTATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAG
EST: AGTGAAAGATCAGACTATTCAGGACTATCAAGTGAGATTACAAT TATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAGEST: gi|29677239|gb|CB673514.1|CB673514
genomic: AGTGAAAGATCAGACTATTCAGGACTATCAAG-GAGATTACAATgtgagttatc ... gtgtttgcagTATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAG
EST: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAAT TATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAGEST: gi|29620704|gb|CB625715.1|CB625715
genomic: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAATgtgagttatc ... gtgtttgcagTATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAG
EST: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAAT TATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAGEST: gi|29677127|gb|CB673402.1|CB673402
genomic: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAATgtgagttatc ... gtgtttgcagTATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAG
EST: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAAT TATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAGEST: gi|29681743|gb|CB678018.1|CB678018
genomic: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAATgtgagttatc ... gtgtttgcagTATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAG
EST: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAAT TATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAGEST: gi|29677126|gb|CB673401.1|CB673401
genomic: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAATgtgagttatc ... gtgtttgcagTATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAG
EST: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAAT TATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAGEST: gi|29625501|gb|CB630512.1|CB630512
genomic: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAATgtgagttatc ... gtgtttgcagTATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAG
EST: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAAT TATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAGEST: gi|29676535|gb|CB672810.1|CB672810
genomic: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAATgtgagttatc ... gtgtttgcagTATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAG
EST: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAAT TATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAGEST: gi|29674816|gb|CB671091.1|CB671091
genomic: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAATgtgagttatc ... gtgtttgcagTATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAG
EST: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAAT TATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAGEST: gi|29676536|gb|CB672811.1|CB672811
genomic: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAATgtgagttatc ... gtgtttgcagTATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAG
EST: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAAT TATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAG
genomic: TTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAATgtgagttatc ... gtgtttgcagTATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAG
ctgaaaaatactggaacacccagaaatgatgttattttcttctttgtgtttgcagTATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAGGAAGAGCTCGAGGAGAAAGCCCCCAAAGTAAAGGCCAAGTCAAAAATGT
ttttcttctttgtgtt CT-rich tract
aaatgatgttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaacagaggggagtctgaatttttcatattagggtgccggaacactgaaaaatactggaacacccagaaatgatgttattttcttctttgtgtttgcagTATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAGGAAGAGCTCGAGGAGAAAGCCCCCAAAGTAAAGGCCAAGTCAAAAATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
aaaacaga
- - - - - - - - - - - - - - - - - gtgccgg
- - - - - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaatga