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gtgcgtatgctgaattttctgggctatttattttttatgaaccttgatccacagacttcattgtccatgcctccagttcatttatttctgcttattgcgttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGATGGAATTCCTGAAGCTGGTGACACCGTTCGGATAGATGTAGTCGGAGGCT
species | Oryza sativa |
transcript | LOC_Os11g36070.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT ATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGATEST: gi|88273561|gb|CI393967.1|CI393967
genomic: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgc ... gttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGAT
EST: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT ATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGATEST: gi|29672693|gb|CB668968.1|CB668968
genomic: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgc ... gttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGAT
EST: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT ATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGATEST: gi|29626153|gb|CB631164.1|CB631164
genomic: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgc ... gttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGAT
EST: TCGAATTAGAGTATCTTANAGAAGATCTTGTCATTGTAATCATGANAACT ATATCGGATATGGACAATATAAATATAGAGACACATGGATTTAGTAGGGATEST: gi|27576960|gb|CA999654.1|CA999654
genomic: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgc ... gttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGAT
EST: CTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT ATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGATEST: gi|29665385|gb|CB661660.1|CB661660
genomic: CTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgc ... gttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGAT
EST: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT ATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGATEST: gi|27578183|gb|CB000878.1|CB000878
genomic: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgc ... gttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGAT
EST: CTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT ATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGATEST: gi|25778077|gb|CA752829.1|CA752829
genomic: CTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgc ... gttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGAT
EST: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT ATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGATEST: gi|29623258|gb|CB628269.1|CB628269
genomic: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgc ... gttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGAT
EST: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT ATATCGGATATGGACAATATAAATATAGAGACACATGGATTTAGTAGGGATEST: gi|29626975|gb|CB631986.1|CB631986
genomic: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgc ... gttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGAT
EST: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT ATATCGGATATGGACAATATAAATATAGAGACACATGGATTTAGTAEST: gi|29623293|gb|CB628304.1|CB628304
genomic: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgc ... gttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTA
EST: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT ATATCGGATATGGACAATATAAATATAGAGA
genomic: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgc ... gttgttgcagATATCGGATACGGACAATATAAATATAGAGA
gacttcattgtccatgcctccagttcatttatttctgcttattgcgttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGATGGAATTCCTGAAGCTGGTGACACCGTTCGGATAGATGTAGTCGGAGGCT
ttcatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtatgctgaattttctgggctatttattttttatgaaccttgatccacagacttcattgtccatgcctccagttcatttatttctgcttattgcgttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGATGGAATTCCTGAAGCTGGTGACACCGTTCGGATAGATGTAGTCGGAGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG