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gtagcaattgctatgaactcagaaatgtatcttatattcataggatttctggaacataggattttgacaggtttctgtaatttgtacagATGATGAACCACGGAAAGATAACAAGGAGAGTGGTGCTACATTTTTCAAGGTTGAGGTTCTGAGCATTGAGCTGATCACTGCATATGGAACTGAG
species | Oryza sativa |
transcript | LOC_Os11g34130.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGACCGGCCTTTGCTGAAGAGAGCACCATGGTTTCAAGGCATTTATCAA ATGATGAACCACGGAAAGATAACAAGGAGAGTGGTGCAACATTTTTCAAGGEST: gi|29628175|gb|CB633186.1|CB633186
genomic: GAGACCAGCCTTTGCTGAAGAGAGCACCATGGTTTCAAGGCATTTATCAAgtagcaattg ... atttgtacagATGATGAACCACGGAAAGATAACAAGGAGAGTGGTGCTACATTTTTCAAGG
EST: AAGACCGGCCTTTGCTGAAGAGAGCACCATGGTTTCAAGGCATTTATCAA ATGATGAACCACGGAAAGATAACAAGGAGAGTGGTGCAACATTTTTCAAGGEST: gi|88974799|gb|CI023095.1|CI023095
genomic: GAGACCAGCCTTTGCTGAAGAGAGCACCATGGTTTCAAGGCATTTATCAAgtagcaattg ... atttgtacagATGATGAACCACGGAAAGATAACAAGGAGAGTGGTGCTACATTTTTCAAGG
EST: GAGACCAGCCTTTGCTGAAGAGAGCACCATGGTTTCAAGGCATTTATCAA ATGATGAGCCACGGAAAGATAACAAGGAGAGTGGTGCTACATTTTTCAAGGEST: gi|88844475|gb|CI020322.1|CI020322
genomic: GAGACCAGCCTTTGCTGAAGAGAGCACCATGGTTTCAAGGCATTTATCAAgtagcaattg ... atttgtacagATGATGAACCACGGAAAGATAACAAGGAGAGTGGTGCTACATTTTTCAAGG
EST: CTTTGCTGAAGAGAGCACCATGGTTTCAAGGCATTTATCAA ATGATGAGCCACGGAAAGATAACAAGGAGAGTGGTGCTACATTTTTCAAGG
genomic: CTTTGCTGAAGAGAGCACCATGGTTTCAAGGCATTTATCAAgtagcaattg ... atttgtacagATGATGAACCACGGAAAGATAACAAGGAGAGTGGTGCTACATTTTTCAAGG
tattcataggatttctggaacataggattttgacaggtttctgtaatttgtacagATGATGAACCACGGAAAGATAACAAGGAGAGTGGTGCTACATTTTTCAAGGTTGAGGTTCTGAGCATTGAGCTGATCACTGCATATGGAACTGAG
ttttgac putative branch site (score: 8)
taatttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcaattgctatgaactcagaaatgtatcttatattcataggatttctggaacataggattttgacaggtttctgtaatttgtacagATGATGAACCACGGAAAGATAACAAGGAGAGTGGTGCTACATTTTTCAAGGTTGAGGTTCTGAGCATTGAGCTGATCACTGCATATGGAACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT