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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtgataatatggataaaactcactgtcttaaatgaacatgcttactcctttgaagtgtgtggtttaattattttcaatgggtggtaaggttctagGTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAATGG

Basic information

species Oryza sativa
transcript LOC_Os11g23790.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g23790.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G079452_T02 (Zea mays), 3'ss of exon 7
---------gtattgtg-ataatatggataaaactcactgtcttaaatgaacatg-cttactcctttgaagtgtgtggtttaattattttcaatgggtggtaaggttctagGTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAATGG
           ||| |   |  | |  |  | | ||||| | ||   |   |||| | || |  |||    | | ||  |  | | || ||    ||  ||||||| || |||||  |||||||||  ||||||||||| |||||||| |||||||| ||||||
gtattgatctcattctttgttttgtacaacacattcactattttttttttgcatgacatagtgttttc---tttttgtctgcaattttgtcgcatggctgtaagGTCCTGGGTGGCGTATATGCAAGTAACACATCTGGTATTACAGCTCAACATCTGGAATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87018909|gb|CI256794.1|CI256794
EST:     TCAAGCCACGGCCAGTCCGTCCAGGAATGTTCCTTGAGACGGTTTCTAAG                         GTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAAT
genomic: TCAAGCCACGGCCAGTCCGTCCAGGAATGTTCCTTGAGACGGTTTCTAAGgtattgtgat ... aaggttctagGTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAAT
EST: gi|88216323|gb|CI216172.1|CI216172
EST:     TCAAGCCACGGCCAGTCCGTCCAGGAATGTTCCTTGAGACGGTTTCTAAG                         GTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAAT
genomic: TCAAGCCACGGCCAGTCCGTCCAGGAATGTTCCTTGAGACGGTTTCTAAGgtattgtgat ... aaggttctagGTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAAT
EST: gi|86841245|gb|CI342970.1|CI342970
EST:     TCAAGCCACGGCCAGTCCGTCCAGGAATGTTCCTTGAGACGGTTTCTAAG                         GTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAAT
genomic: TCAAGCCACGGCCAGTCCGTCCAGGAATGTTCCTTGAGACGGTTTCTAAGgtattgtgat ... aaggttctagGTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttactcctttgaagtgtgtggtttaattattttcaatgggtggtaaggttctagGTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAATGG
                      tttaattattttcaat  TA-rich tract