1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taccaccatctctttggcacttatttttaagatagtaattttcgtaattatttatggacataaagaagctcatgccaatatactgttaattgatttccagGGTTCCAGGCTTACAGCTTTCGAGTTAGTTCACGACAAAGTACCCGCAACGCTGATAGCAGATTCTGCTGCAGCTGCACTGATGAAGAGCGGGTGTATTC
species | Oryza sativa |
transcript | LOC_Os11g11050.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGGAATTCTAGAGAAGGCCTTTTGCACTGAAACTCGTCCATTTAACCAG GGTTCCAGGCTTACAGCTTTCGAGTTAGTTCACGACAAAGTACCCGCAACGEST: gi|9884547|gb|BE607380.1|BE607380
genomic: GAGGAATTCTAGAGAAGGCCTTTTGCACTGAAACTCGTCCATTTAACCAGgtggatattc ... tgatttccagGGTTCCAGGCTTACAGCTTTCGAGTTAGTTCACGACAAAGTACCCGCAACG
EST: GAGGAATTCTAGAGAAGGCCTTTTGCACTGAAACTCGTCCATTTAACCAG GGTTCCAGGCTTACAGCTTTCGAGTTAGTTCACGACAAAGTACCCGCAACGEST: gi|428500|gb|D24651.1|D24651
genomic: GAGGAATTCTAGAGAAGGCCTTTTGCACTGAAACTCGTCCATTTAACCAGgtggatattc ... tgatttccagGGTTCCAGGCTTACAGCTTTCGAGTTAGTTCACGACAAAGTACCCGCAACG
EST: GAGGAATTCTAGAGAAGGCCTTTTGCACTGAAACTCGTCCATTTAACCAG GGTTCCAGGCTTACAGCTTTCGAGTTAGTTCACGNCAAAGTACCCGCAACGEST: gi|218497233|gb|FG957727.1|FG957727
genomic: GAGGAATTCTAGAGAAGGCCTTTTGCACTGAAACTCGTCCATTTAACCAGgtggatattc ... tgatttccagGGTTCCAGGCTTACAGCTTTCGAGTTAGTTCACGACAAAGTACCCGCAACG
EST: GAGGAATTCTAGAGAAGGCCTTTTGCACTGAAACTCGTCCATTTAACCAG GGTTCCAGGCTTACAGCTTTCGAGTTAGTTCACGACAAAGTACCCGCAACGEST: gi|9884545|gb|BE607378.1|BE607378
genomic: GAGGAATTCTAGAGAAGGCCTTTTGCACTGAAACTCGTCCATTTAACCAGgtggatattc ... tgatttccagGGTTCCAGGCTTACAGCTTTCGAGTTAGTTCACGACAAAGTACCCGCAACG
EST: GAGGAATTCTAGAGAAGGCCTTTTGCACTGAAACTCGTCCATTTAACCAG GGTTCCAGGCTTACAGCTTTCGAGTTAGTTCACGACAAAGTACCCGCAACG
genomic: GAGGAATTCTAGAGAAGGCCTTTTGCACTGAAACTCGTCCATTTAACCAGgtggatattc ... tgatttccagGGTTCCAGGCTTACAGCTTTCGAGTTAGTTCACGACAAAGTACCCGCAACG
aattatttatggacataaagaagctcatgccaatatactgttaattgatttccagGGTTCCAGGCTTACAGCTTTCGAGTTAGTTCACGACAAAGTACCCGCAACGCTGATAGCAGATTCTGCTGCAGCTGCACTGATGAAGAGCGGGTGTATTC
tttcc CT-rich tract
aatatactgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taccaccatctctttggcacttatttttaagatagtaattttcgtaattatttatggacataaagaagctcatgccaatatactgttaattgatttccagGGTTCCAGGCTTACAGCTTTCGAGTTAGTTCACGACAAAGTACCCGCAACGCTGATAGCAGATTCTGCTGCAGCTGCACTGATGAAGAGCGGGTGTATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- -caccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -acataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgtt