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gtaatgcaacagaagttgaaaaaacttctgtactctgccattttaagttggttgcttatcattttctgttgttttctcatagaattttaattttcctcagGTTATTATGAATACCAATGGCTACAGTCTTTCGGTCGATATTTGGAGCCTTGGCTGCACCATTATTGAGATGGCAACCGCAAGACCTCCTTGGATTCAGT
species | Oryza sativa |
transcript | LOC_Os11g10100.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACACATCTATCAAGTCCTTCAAAGGAAGCCCTTACTGGATGGCGCCTGAG GTTATTATGAATACCAATGGCTACAGTCTTTCGGTTGATATTTGGAGCCTTEST: gi|29680776|gb|CB677051.1|CB677051
genomic: ACACATCTATCAAGTCCTTCAAAGGAAGCCCTTACTGGATGGCGCCTGAGgtaatgcaac ... ttttcctcagGTTATTATGAATACCAATGGCTACAGTCTTTCGGTCGATATTTGGAGCCTT
EST: ACACATCTATCAAGTCCTTCAAAGGAAGCCCTTACTGGATGGCGCCTGAG GTTATTATGAATACCAATGGCTACAGTCTTTCGGTCGATATTTGGAGCCTT
genomic: ACACATCTATCAAGTCCTTCAAAGGAAGCCCTTACTGGATGGCGCCTGAGgtaatgcaac ... ttttcctcagGTTATTATGAATACCAATGGCTACAGTCTTTCGGTCGATATTTGGAGCCTT
agttggttgcttatcattttctgttgttttctcatagaattttaattttcctcagGTTATTATGAATACCAATGGCTACAGTCTTTCGGTCGATATTTGGAGCCTTGGCTGCACCATTATTGAGATGGCAACCGCAAGACCTCCTTGGATTCAGT
ttttaat putative branch site (score: 3)
ttttaattttcctc CT-rich tract
ttttctcatagaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgcaacagaagttgaaaaaacttctgtactctgccattttaagttggttgcttatcattttctgttgttttctcatagaattttaattttcctcagGTTATTATGAATACCAATGGCTACAGTCTTTCGGTCGATATTTGGAGCCTTGGCTGCACCATTATTGAGATGGCAACCGCAAGACCTCCTTGGATTCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA