1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtattgttctcgcatgattctgacttcctgctttaaatatgactagcacaaccatttgatgacaaattccttcatggaaatttagAATCTTTCCCCACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAG
species | Oryza sativa |
transcript | LOC_Os11g06760.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACCTATCCCAGCTGAAGAAGTGAGACCCGCTTTTGACTATGAACACGAAG AATCTTTCCCCGCTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAEST: gi|13818900|gb|AB060279.1|AB060279
genomic: ACCTATCCCAGCTGAAGAAGTGAGACCCGCTTTTGACTATGAACACGAAGgtattgttct ... ggaaatttagAATCTTTCCCCACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCA
EST: ACCTATCCCAGCTGAAGAAGTGAGACCCGCTTTTGACTATGAACACGAAG AATCTTTCCCCACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAEST: gi|66916064|gb|CX102912.1|CX102912
genomic: ACCTATCCCAGCTGAAGAAGTGAGACCCGCTTTTGACTATGAACACGAAGgtattgttct ... ggaaatttagAATCTTTCCCCACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCA
EST: ACCCATCCCAGCTGAAGAAGTGAGACCCGCTTTTGACTATGAACACGAAG AATCTTTCCCCGCTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAEST: gi|29677610|gb|CB673885.1|CB673885
genomic: ACCTATCCCAGCTGAAGAAGTGAGACCCGCTTTTGACTATGAACACGAAGgtattgttct ... ggaaatttagAATCTTTCCCCACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCA
EST: ACCTATCCCAGCTGAAGAAGTGAGACCCGCTTTTGACTATGAACACGAAG AATCTTTCCCCACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAEST: gi|38474027|gb|CF958159.1|CF958159
genomic: ACCTATCCCAGCTGAAGAAGTGAGACCCGCTTTTGACTATGAACACGAAGgtattgttct ... ggaaatttagAATCTTTCCCCACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCA
EST: ACCTATCCCAGCTGAAGAAGTGAGACCCGCTTTTGACTATAAACACGAAG AATCTTTCCCCGCTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAEST: gi|86897912|gb|CI289086.1|CI289086
genomic: ACCTATCCCAGCTGAAGAAGTGAGACCCGCTTTTGACTATGAACACGAAGgtattgttct ... ggaaatttagAATCTTTCCCCACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCA
EST: ACCTATCCCAGCTGAAGAAGTGAGACCCGCTTTTGACTATGAACACGAAG AATCTTTCCCCACTAATCGTGGAAGEST: gi|8527776|gb|AU092591.1|AU092591
genomic: ACCTATCCCAGCTGAAGAAGTGAGACCCGCTTTTGACTATGAACACGAAGgtattgttct ... ggaaatttagAATCTTTCCCCACTAATCGTGGAAG
EST: CCTATCCCAGCTGAAGAAGTGAGACCCGCTTTTGACTATGAACACGAAG AATCTTTCCCCACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCA
genomic: CCTATCCCAGCTGAAGAAGTGAGACCCGCTTTTGACTATGAACACGAAGgtattgttct ... ggaaatttagAATCTTTCCCCACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCA
ctttaaatatgactagcacaaccatttgatgacaaattccttcatggaaatttagAATCTTTCCCCACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAG
atttgat putative branch site (score: 55)
aaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgttctcgcatgattctgacttcctgctttaaatatgactagcacaaccatttgatgacaaattccttcatggaaatttagAATCTTTCCCCACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG