1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtactttgtttgacaaacctatatttagttttttgcatataaggctgagcatttatcatatactctgcacaaatatgcctactatcctttagatcttcgatcattcttctgaatctgtatctcagtatttgtgcatctctcgtttgtacagGTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAGGGCCAGTTTGTGAGCCAAAAACTGAAGTCAGCTATAACAACAGAGGCAG
species | Oryza sativa |
transcript | LOC_Os11g05930.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAG GTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAGEST: gi|29666530|gb|CB662805.1|CB662805
genomic: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAGgtactttgtt ... gtttgtacagGTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAG
EST: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAG GTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAGEST: gi|29680952|gb|CB677227.1|CB677227
genomic: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAGgtactttgtt ... gtttgtacagGTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAG
EST: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAG GTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAGEST: gi|29630672|gb|CB635681.1|CB635681
genomic: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAGgtactttgtt ... gtttgtacagGTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAG
EST: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAG GTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAGEST: gi|86544270|gb|CI184476.1|CI184476
genomic: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAGgtactttgtt ... gtttgtacagGTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAG
EST: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAG GTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAGEST: gi|12404880|gb|AU166481.1|AU166481
genomic: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAGgtactttgtt ... gtttgtacagGTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAG
EST: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTNGAGAAAAAG GTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAGEST: gi|15855855|gb|BI808667.1|BI808667
genomic: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAGgtactttgtt ... gtttgtacagGTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAG
EST: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAG GTCAGGTATCATA-CAGGAAGAAGCTTGCAGAAC-AAGACCCAGGGTTAAGEST: gi|86598721|gb|CI355338.1|CI355338
genomic: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAGgtactttgtt ... gtttgtacagGTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAG
EST: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAG GTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAGEST: gi|25806234|gb|CA762195.1|CA762195
genomic: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAGgtactttgtt ... gtttgtacagGTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAG
EST: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATG-TTCGAGAAAAAG GTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAGEST: gi|86844227|gb|CI337608.1|CI337608
genomic: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAGgtactttgtt ... gtttgtacagGTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAG
EST: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATTTTTCGAGAAAAAG GTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAGEST: gi|29638598|gb|CB643607.1|CB643607
genomic: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAGgtactttgtt ... gtttgtacagGTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAG
EST: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAG GTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAGEST: gi|2431343|gb|C73763.1|C73763
genomic: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAGgtactttgtt ... gtttgtacagGTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAG
EST: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGANAAAG GTCAGGTATCATAGCAGGAAGAAGCTTNCAGACCAAAGACCCNGG-TTAAGEST: gi|29681887|gb|CB678162.1|CB678162
genomic: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAGgtactttgtt ... gtttgtacagGTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAG
EST: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAG GTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAG
genomic: CCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAGgtactttgtt ... gtttgtacagGTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAG
tcgatcattcttctgaatctgtatctcagtatttgtgcatctctcgtttgtacagGTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAGGGCCAGTTTGTGAGCCAAAAACTGAAGTCAGCTATAACAACAGAGGCAG
tctctcgttt CT-rich tract
agtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttgtttgacaaacctatatttagttttttgcatataaggctgagcatttatcatatactctgcacaaatatgcctactatcctttagatcttcgatcattcttctgaatctgtatctcagtatttgtgcatctctcgtttgtacagGTCAGGTATCATAGCAGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAGGGCCAGTTTGTGAGCCAAAAACTGAAGTCAGCTATAACAACAGAGGCAG
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