1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagcaaccacacttcacatcctgccaatgccaatgaacaaaccatcttactgaaaaacagacacaaaacaatcagaaatgctctgcttggcctaacatttccttttgtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGACGTTGTGTACA
species | Oryza sativa |
transcript | LOC_Os11g04210.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAA CTGGGGATCAACATAGTGGACTTATCAGTGTCAGGACTGGGAGGCTGCCCAEST: gi|86884405|gb|CI336973.1|CI336973
genomic: TTCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAAgtaagcaacc ... gtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCA
EST: CATACTGGTCTCTCTCCAA CTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCAEST: gi|88481344|gb|CI418615.1|CI418615
genomic: CATACTGGTCTCTCTCCAAgtaagcaacc ... gtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCA
EST: TTCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAA CTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCAEST: gi|88511552|gb|CI439058.1|CI439058
genomic: TTCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAAgtaagcaacc ... gtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCA
EST: TTCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAA CTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCA
genomic: TTCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAAgtaagcaacc ... gtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCA
cacaaaacaatcagaaatgctctgcttggcctaacatttccttttgtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGACGTTGTGTACA
gcctaac putative branch site (score: 2)
tttccttttgtatt CT-rich tract
ttttgtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaaccacacttcacatcctgccaatgccaatgaacaaaccatcttactgaaaaacagacacaaaacaatcagaaatgctctgcttggcctaacatttccttttgtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGACGTTGTGTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA