1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtatgagctatattttcccattgaaaatcaagttcttgatatgtacatatatgccagacatgtctgggataattgacttgatttacattcaaacaattgtagGAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGGAATCTATTGGTCCATGGGAAGAGAGGCCTGGACACTTTGGGGATGTTTG
species | Oryza sativa |
transcript | LOC_Os11g03730.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG GAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGGEST: gi|29644765|gb|CB649772.1|CB649772
genomic: ACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGG
EST: ACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG GAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGGEST: gi|29646541|gb|CB651548.1|CB651548
genomic: ACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGG
EST: ACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG GAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGGEST: gi|29632787|gb|CB637796.1|CB637796
genomic: ACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGG
EST: ACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG GAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATCCATGTGGAGGGEST: gi|29636288|gb|CB641297.1|CB641297
genomic: ACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGG
EST: TATATCTATGATGTTGGACTTAAAACCACAATTCTTGAGATTCCCTG GAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGG
genomic: TATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGG
tatatgccagacatgtctgggataattgacttgatttacattcaaacaattgtagGAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGGAATCTATTGGTCCATGGGAAGAGAGGCCTGGACACTTTGGGGATGTTTG
atttacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgagctatattttcccattgaaaatcaagttcttgatatgtacatatatgccagacatgtctgggataattgacttgatttacattcaaacaattgtagGAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGGAATCTATTGGTCCATGGGAAGAGAGGCCTGGACACTTTGGGGATGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG