1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtacaccgccagcattattcacctctgctagatagtatgtatgtacggtgcactgttaccaagttcactgagtaatgaaacaattgccttgttttgatgggaaaaaaaaacagACAAAGGCAGCAAGACCAGTGCTGGGTAGATACTACAGGGAGCCAGAGAAGTCAGGTCCGCTGCCACTTCACCTGTTTGGCGTTCTGCTGAGGAGCTTGA
species | Oryza sativa |
transcript | LOC_Os11g01340.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCCCCAAATTCCTCATTATCACCTCGTAGAAGCA ACAAAGGCAGCAAGGCCAGTGCTGGGCAGATACTACAGGGAGCCAGAGAAGEST: gi|3767608|gb|AU031635.1|AU031635
genomic: CCCCCAAATTCCTCATTATCACCTCGTAGAAGCAgtaagtacac ... aaaaaaacagACAAAGGCAGCAAGACCAGTGCTGGGTAGATACTACAGGGAGCCAGAGAAG
EST: ATCCCACCA-CTTTTNCCCCC-AATTCCTCATTATCACCTCGTAGAAGCA ACAAAGGCAGCAAGACCAGTGCTGGGTAGATACTACAGGGAGCCAGAGAAGEST: gi|87029053|gb|CI351356.1|CI351356
genomic: AT-CCACCACCTTTT-CCCCCAAATTCCTCATTATCACCTCGTAGAAGCAgtaagtacac ... aaaaaaacagACAAAGGCAGCAAGACCAGTGCTGGGTAGATACTACAGGGAGCCAGAGAAG
EST: TCATCCACCACCTTTTCCCCCAAATTCCTCATTATCACCTCGTAGAAGCA ACAAAGGCAGCAAGGCCAGTGCTGGGCAGATACTACAGGGAGCCAGAGAAGEST: gi|86600097|gb|CI258437.1|CI258437
genomic: TCATCCACCACCTTTTCCCCCAAATTCCTCATTATCACCTCGTAGAAGCAgtaagtacac ... aaaaaaacagACAAAGGCAGCAAGACCAGTGCTGGGTAGATACTACAGGGAGCCAGAGAAG
EST: TCATCCACCACCTTTTCCCCCAAATTCCTCATTATCACCTCGTAGAAGCA ACAAAGGCAGCCAAGGCCAGTGCTGGGCAGATACTACAGGGAGCCAGAGAAEST: gi|87010033|gb|CI277534.1|CI277534
genomic: TCATCCACCACCTTTTCCCCCAAATTCCTCATTATCACCTCGTAGAAGCAgtaagtacac ... aaaaaaacagACAAAGGCAG-CAAGACCAGTGCTGGGTAGATACTACAGGGAGCCAGAGAA
EST: CACCACCTTTTCCCCCAAATTCCTCATTATCACCTCGTAGAAGCA ACAAAGGCAGCAAGGCCAGTGCTGGGCAGATACTACAGGGAGCCAGAGAAG
genomic: CACCACCTTTTCCCCCAAATTCCTCATTATCACCTCGTAGAAGCAgtaagtacac ... aaaaaaacagACAAAGGCAGCAAGACCAGTGCTGGGTAGATACTACAGGGAGCCAGAGAAG
ccaagttcactgagtaatgaaacaattgccttgttttgatgggaaaaaaaaacagACAAAGGCAGCAAGACCAGTGCTGGGTAGATACTACAGGGAGCCAGAGAAGTCAGGTCCGCTGCCACTTCACCTGTTTGGCGTTCTGCTGAGGAGCTTGA
ttttgat putative branch site (score: 4)
aaaaaaaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacaccgccagcattattcacctctgctagatagtatgtatgtacggtgcactgttaccaagttcactgagtaatgaaacaattgccttgttttgatgggaaaaaaaaacagACAAAGGCAGCAAGACCAGTGCTGGGTAGATACTACAGGGAGCCAGAGAAGTCAGGTCCGCTGCCACTTCACCTGTTTGGCGTTCTGCTGAGGAGCTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT