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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatgtcttgtaacatgaaacagagggaaacggagggagcagtaattgataaataagagggtgatgttaggcgtgcaatctgatccatacatacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTTGCCCTTCTGCGCCATCGCCTACGCCCTAACGGGGGTCGTCGCCTCGTTA

Basic information

species Oryza sativa
transcript LOC_Os10g42780.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g42780.6 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM5G873519_T02 (Zea mays), 3'ss of exon 7
aaatgtcttgtaacatgaaacagagggaaacggagggagcagtaattgataa-ataagagggtgatgttaggcgtgcaatctgatccatacatacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTTGCCCTTCTGCGCCATCGCCTACGCCCTAACGGGGGTCGTCGCCTCGTTA
                | ||   ||  |  |   |      || |   |||  || |   ||   ||   |   ||||||||   |          ||||| || || ||||||||||| |||||  || | |||||||| ||||||||| | || |||||||||||||| ||     | |||||| |  ||| | || | 
----------------gtaattcagccattcttcgtt--ttgtgaagcatagcatgattaggccctgactga-atgcaatcttgccttgctgatggtgcagCGCTCAAGGACTGGGAACAGCAGCACTGGCGGCCAAGGAACCTGAAGCGCTCCCTTTCTGCGCCATCGCTTATAGTTTCACGGGGATTTTCGGCACGCTG

upper sequence: LOC_Os10g42780.6 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G478212_T01 (Zea mays), 3'ss of exon 7
--aaatgtcttgtaaca-tgaaacagagggaaacggagggagcagtaattgataaataagagggtgatgttaggcgtgcaatctgatccatacatacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTTGCCCTTCTGCGCCATCGCCTACGCCCTAACGGGGGTCGTCGCCTCGTTA
  || | ||| |  ||| ||       |         |  | |  |  ||  | |  | | |  |||   ||  | |||    ||    ||  ||   || ||||| ||||||||||| || |||||  ||||||||||||| ||||||||| | || |||||||||||||| || |  || |||||  |  | | ||| || 
gtaattttctggatacaatgccgttctgcatcgtttggtaatccttcgtttgtgagcatgtgtctgaatgtaatcttgc---ttggctgatg-atg-gtgtagTGCTCATGGACTGGGGACAGCAGCACTGTCAGCCAAGGAACCTGAAGCGCTTCCTTTCTGCGCCATCGCTTATGGTCTCACGGGAATTTTTGGCTCCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88479841|gb|CI417112.1|CI417112
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88203285|gb|CI203134.1|CI203134
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|8858775|gb|AU096093.1|AU096093
EST:     AAG-TTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88905858|gb|CI002196.1|CI002196
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88517653|gb|CI445307.1|CI445307
EST:     AAGCTTCGCCTCAAAAACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88669920|gb|CI724036.1|CI724036
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88665559|gb|CI715715.1|CI715715
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|86538615|gb|CI178821.1|CI178821
EST:     TCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: TCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88503616|gb|CI431122.1|CI431122
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88482268|gb|CI419539.1|CI419539
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88676201|gb|CI730314.1|CI730314
EST:     AAGCTTCGCCTCAAAGACCCCATCGNACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGANTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88674712|gb|CI728825.1|CI728825
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGNACCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88674598|gb|CI728711.1|CI728711
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88525375|gb|CI453376.1|CI453376
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88516766|gb|CI442422.1|CI442422
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88552990|gb|CI483055.1|CI483055
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88540518|gb|CI468569.1|CI468569
EST:     GACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: GACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88537215|gb|CI465037.1|CI465037
EST:     CACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: CACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88668108|gb|CI722847.1|CI722847
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88562740|gb|CI493457.1|CI493457
EST:     TAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: TAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88551433|gb|CI481490.1|CI481490
EST:     CCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: CCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88511414|gb|CI438920.1|CI438920
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88674693|gb|CI728806.1|CI728806
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATACGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGNAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88516177|gb|CI443831.1|CI443831
EST:     GGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: GGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|89171620|gb|CI720679.1|CI720679
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGACCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88671121|gb|CI725237.1|CI725237
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88673791|gb|CI727904.1|CI727904
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88503300|gb|CI430806.1|CI430806
EST:     CTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: CTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|86878387|gb|CI319620.1|CI319620
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88670306|gb|CI724422.1|CI724422
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88671301|gb|CI724347.1|CI724347
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88908739|gb|CI714881.1|CI714881
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88529307|gb|CI457613.1|CI457613
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|29676079|gb|CB672354.1|CB672354
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88511632|gb|CI439138.1|CI439138
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88669371|gb|CI723289.1|CI723289
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88373923|gb|CI508542.1|CI508542
EST:     GAATAGGGACGGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCANCCAAGGAGCCTGAAGCGTT
genomic: GAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|29626168|gb|CB631179.1|CB631179
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAACAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAACCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88287857|gb|CI510137.1|CI510137
EST:     GACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: GACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88513815|gb|CI441321.1|CI441321
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88905613|gb|CI712912.1|CI712912
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|86871131|gb|CI328333.1|CI328333
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGGCGT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAA-GCGT
EST: gi|88675191|gb|CI729304.1|CI729304
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88673702|gb|CI727815.1|CI727815
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|29626167|gb|CB631178.1|CB631178
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAACAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgataaataagagggtgatgttaggcgtgcaatctgatccatacatacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTTGCCCTTCTGCGCCATCGCCTACGCCCTAACGGGGGTCGTCGCCTCGTTA
                                atctgat  putative branch site (score: 4)
     aaataaga  TA-rich tract