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gtagtgttcttatttgctaagcatgcctatgagtaaattttgtatgttgtctctgtttgcatatgattatagccaaatctatgaatcataagttggaaaccgttaagtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG
species | Oryza sativa |
transcript | LOC_Os10g40030.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCACGAATTCTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAEST: gi|29656761|gb|CB653036.1|CB653036
genomic: GCACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: CCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTTTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAEST: gi|86842409|gb|CI335295.1|CI335295
genomic: CCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: CCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAEST: gi|86835581|gb|CI348038.1|CI348038
genomic: CCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: CCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAEST: gi|86864259|gb|CI334058.1|CI334058
genomic: CCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: TTTGCACTCTACCGAGCTTGCACGAATTCTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAEST: gi|88531802|gb|CI460315.1|CI460315
genomic: TTTGCACTCTACCGAGCTTGCACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: CTACCGAGCTTGCACGAATTGTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAEST: gi|88506009|gb|CI433515.1|CI433515
genomic: CTACCGAGCTTGCACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: CACGAATTCTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAEST: gi|38477927|gb|CF962060.1|CF962060
genomic: CACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: CCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAEST: gi|3764142|gb|AU030642.1|AU030642
genomic: CCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: CCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAEST: gi|29656760|gb|CB653035.1|CB653035
genomic: CCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: CCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAEST: gi|86832996|gb|CI333595.1|CI333595
genomic: CCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: CCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTTCACGAATTGTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAEST: gi|88478793|gb|CI416064.1|CI416064
genomic: CCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: CTACCGAGCTTGCACGAATTCTGAAG GGAGATGGT-TGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAEST: gi|88525522|gb|CI452377.1|CI452377
genomic: CTACCGAGCTTGCACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: CACGAATTCTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAEST: gi|88286185|gb|CI522485.1|CI522485
genomic: CACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: AGCTTGCACGAATTCTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAEST: gi|86863517|gb|CI345235.1|CI345235
genomic: AGCTTGCACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: CCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAEST: gi|86865757|gb|CI335450.1|CI335450
genomic: CCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: GCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCCGTTTTGTTGGAEST: gi|86841577|gb|CI336520.1|CI336520
genomic: GCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: TTGCACGAATTCTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGG-EST: gi|86598223|gb|CI354840.1|CI354840
genomic: TTGCACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
EST: GCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAG GGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
genomic: GCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAGgtagtgttct ... gtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGA
tatgattatagccaaatctatgaatcataagttggaaaccgttaagtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG
aaatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgttcttatttgctaagcatgcctatgagtaaattttgtatgttgtctctgtttgcatatgattatagccaaatctatgaatcataagttggaaaccgttaagtatgaatagGGAGATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC