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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtagcttatgcctaaatttcgtatgtaatctctgatcatatatattatatgtcaaatcaatggagaataaccgggaaaccgttgagtatgaacagGAAGATGGTGTGAACATTTCGGCTAATGCAGTCCATCCTGGTGTTGTTACAACCAACCTGTTCAGGCACAGGACTATTATAAATG

Basic information

species Oryza sativa
transcript LOC_Os10g40020.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g40020.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G464885_T01 (Zea mays), 3'ss of exon 5
gtagtagcttatgcctaaatttcgtatgtaatctctgatcatatatattatatgtcaaatcaatggagaataaccgggaaaccgttgagtatgaacagGAAGATGGTGTGAACATTTCGGCTAATGCAGTCCATCCTGGTGTTGTTACAACCAACCTGTTCAGGCACAGGACTATTATAAATG
   ||| || | ||||   || | |   |||    || | | ||||   |||| | || |  |     || ||   ||  | | |      ||||||||| ||||| ||||| ||||| || |||||||| |||||||||||  | |  || ||||| || ||| ||||||||||| |   ||
---gtatctcaggcctttgttac-tgaataactattggt-acatatga-atatatgaactgcacaataaagaaagaggttatcttct----tgaacagGAGGATGGAGTGAATATTTCAGCCAATGCAGTTCATCCTGGTGTCATCATGACTAACCTTTTTAGGAACAGGACTATTGTCTCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattatatgtcaaatcaatggagaataaccgggaaaccgttgagtatgaacagGAAGATGGTGTGAACATTTCGGCTAATGCAGTCCATCCTGGTGTTGTTACAACCAACCTGTTCAGGCACAGGACTATTATAAATG
                        gaataac  putative branch site (score: 2)
             aaatcaat  TA-rich tract