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gttttccctcattttattttgatgatttagatgcactcaattgatttttaatctatctctaaaatttatgttaacattggaaccttcatatatatagATAACCAGTTTGAAATTTGTTCCTCGGGATGAGCTCTTTGTAACTGGATCAGCAGATAAG
species | Oryza sativa |
transcript | LOC_Os10g32880.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACAGGCCATCCGGTCAAATCTTGTGCACACTTACTGGTCACTCAAAGAAG ATAACCAGTTTGAAATTTGTTCCTCGGGATGAGCTCTTTGTAACTGGATCAEST: gi|58686960|gb|CK075647.1|CK075647
genomic: ACAGGCCATCCGGTCAAATCTTGTGCACACTTACTGGTCACTCAAAGAAGgttttccctc ... atatatatagATAACCAGTTTGAAATTTGTTCCTCGGGATGAGCTCTTTGTAACTGGATCA
EST: ACAGGCCATCCGGTCAAATCTTGTGCACACTTACTGGTCACTCAAAGAAG ATAACCAGTTTGAAATTTGTTCCTCGGGATGAGCTCTTTGTAACTGGATCAEST: gi|25797187|gb|CA753148.1|CA753148
genomic: ACAGGCCATCCGGTCAAATCTTGTGCACACTTACTGGTCACTCAAAGAAGgttttccctc ... atatatatagATAACCAGTTTGAAATTTGTTCCTCGGGATGAGCTCTTTGTAACTGGATCA
EST: ACAGGTCATCCGGTCAAATCTTGTGCACACTTACTGGTCACTCAAAGAAG ATAACCAGTTTGAAATTTGTTCCTCGGGATGAGCTCTTTGTAACTGGATCA
genomic: ACAGGCCATCCGGTCAAATCTTGTGCACACTTACTGGTCACTCAAAGAAGgttttccctc ... atatatatagATAACCAGTTTGAAATTTGTTCCTCGGGATGAGCTCTTTGTAACTGGATCA
gatttttaatctatctctaaaatttatgttaacattggaaccttcatatatatagATAACCAGTTTGAAATTTGTTCCTCGGGATGAGCTCTTTGTAACTGGATCAGCAGATAAG
tgttaac putative branch site (score: 33)
ccttcat putative PPT
ttaatctatctctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttccctcattttattttgatgatttagatgcactcaattgatttttaatctatctctaaaatttatgttaacattggaaccttcatatatatagATAACCAGTTTGAAATTTGTTCCTCGGGATGAGCTCTTTGTAACTGGATCAGCAGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT