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gtaagtttttaacttctgttgttggttgatatgttcagtttttcttttggaactatctaagtcatgaggttatatttaacagGAACTGGATGACCCCTTGATCCTGATACATGACAAGAAGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAG
species | Oryza sativa |
transcript | LOC_Os10g32550.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTCTCCTTACTTTGTTACCAACCCAAAGACCCAGAAATGT GAACTGGATGACCCCTTGATCCTGATACATGACAAGAAGGTTTCGAACCTGEST: gi|58663314|gb|CK052000.1|CK052000
genomic: TCTCTCCTTACTTTGTTACCAACCCAAAGACCCAGAAATGTgtaagttttt ... tatttaacagGAACTGGATGACCCCTTGATCCTGATACATGACAAGAAGGTTTCGAACCTG
EST: GAGGCTACATCTCTCCTTACTTTGTTACCAACCCAAAGACCCAGAAATGT GAACTGGATGACCCCTTGATCCTGATACATGACAAGAAGGTTTCGAACCTGEST: gi|568031|gb|D38866.1|D38866
genomic: GAGGCTACATCTCTCCTTACTTTGTTACCAACCCAAAGACCCAGAAATGTgtaagttttt ... tatttaacagGAACTGGATGACCCCTTGATCCTGATACATGACAAGAAGGTTTCGAACCTG
EST: CTCTCCTTACTTTGTTACCAACCCAAAGACCCAGAAATGT GAACTGGATGACCCCTTGATCCTGATACATGACAAGAAGGTTTCGAACCTGEST: gi|86851054|gb|CI311272.1|CI311272
genomic: CTCTCCTTACTTTGTTACCAACCCAAAGACCCAGAAATGTgtaagttttt ... tatttaacagGAACTGGATGACCCCTTGATCCTGATACATGACAAGAAGGTTTCGAACCTG
EST: GAGGCTACATCTCTCCTTACTTTGTTACCAACCCAAAGACCCAGAAATGT GAACTGGATGACCCCTGGATCCTGATACATGACAAGAAGGTTTCGAACCTG
genomic: GAGGCTACATCTCTCCTTACTTTGTTACCAACCCAAAGACCCAGAAATGTgtaagttttt ... tatttaacagGAACTGGATGACCCCTTGATCCTGATACATGACAAGAAGGTTTCGAACCTG
gatatgttcagtttttcttttggaactatctaagtcatgaggttatatttaacagGAACTGGATGACCCCTTGATCCTGATACATGACAAGAAGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAG
ggttgat putative branch site (score: 104)
ttatatttaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttaacttctgttgttggttgatatgttcagtttttcttttggaactatctaagtcatgaggttatatttaacagGAACTGGATGACCCCTTGATCCTGATACATGACAAGAAGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG