1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgcatcaggagtatctccgagtcagttggcttgaacagaaactggagcatgacagtagaaaccatgattaacttttcttgcgttcaattcttgagctgttctctaaggtaaatttaggaatcatcttaacagattgtactatcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGTAACTGACCCAGGAAACAGGCTGGCAACTGTGTATTGTACAACAGCAGT
species | Oryza sativa |
transcript | LOC_Os10g30520.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|88550049|gb|CI479990.1|CI479990
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|87033001|gb|CI187625.1|CI187625
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|88907079|gb|CI376151.1|CI376151
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCGCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|88268419|gb|CI378354.1|CI378354
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|86491303|gb|CI133936.1|CI133936
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|33659861|gb|CF290828.1|CF290828
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|88844315|gb|CI005688.1|CI005688
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|88460350|gb|CI529425.1|CI529425
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|88545055|gb|CI474585.1|CI474585
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|86489439|gb|CI132072.1|CI132072
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|88524917|gb|CI453875.1|CI453875
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|86485994|gb|CI128627.1|CI128627
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: ACATCAGCGAAAACGGCTGATAACATAGACCAACTATTCGAG GAAATTGCGAAGAGTTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|86835193|gb|CI346668.1|CI346668
genomic: ACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|86542752|gb|CI182958.1|CI182958
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|88550050|gb|CI479991.1|CI479991
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|88846352|gb|CI373120.1|CI373120
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|88274933|gb|CI388391.1|CI388391
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGEST: gi|86835204|gb|CI346679.1|CI346679
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
EST: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
genomic: TCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGgtatgcatca ... atcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGG
ctgttctctaaggtaaatttaggaatcatcttaacagattgtactatcatggcagGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGTAACTGACCCAGGAAACAGGCTGGCAACTGTGTATTGTACAACAGCAGT
tcttaac putative branch site (score: 19)
taaattta TA-rich tract