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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagattgctaatggacaattccttgatgccttagtttataattttttgccctgacatgcataactggaattttagGCTATTGCCGCTAGTACATCTGATGCTCCTTTGATTCTGGAATTCCTTCAGAGACGAAAGTCTGACCCTAGCATG

Basic information

species Oryza sativa
transcript LOC_Os10g26145.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g26140.2 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G444692_T03 (Zea mays), 3'ss of exon 3
gtaagagattgctaatggacaattccttg------atgcct------tagtttataattttttgccctgacatgcataactggaattttagGCTATTGCCGCTAGTACATCTGATGCTCCTTTGATTCTGGAATTCCTTCAGAGACGAAAGTCTGACCCTAGCATG
||||||  |||||||||| |||||  ||       |  |||      | ||  ||   ||||||| || |||||| || || |||||  |||||||||| |||||||  |||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||||
gtaagaagttgctaatggtcaattttttttgtgtcacacctctttcattgtgaatgcatttttgctctaacatgcttatcttgaattacagGCTATTGCTGCTAGTAGTTCTGATGCTCCTTCAATTTTGGAATTCCTTCAGAGACGAAAGTCTGACCCAAGCATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgatgccttagtttataattttttgccctgacatgcataactggaattttagGCTATTGCCGCTAGTACATCTGATGCTCCTTTGATTCTGGAATTCCTTCAGAGACGAAAGTCTGACCCTAGCATG
                                     gcataac  putative branch site (score: 3)
          ttagtttataattttt  TA-rich tract