1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aatttgaacttgctctccttatgataacttatttgaagcataatatatactgcagaagtttgccgtaattgataattcatataaatgattttatttgcagCTGCTGGACCAGGAAAGTGCTTGATAAATCATGGCGGCTGTTGGCATGAGACTCGCAATGGCAAAACATTTTCTGCTTGTCAG
species | Oryza sativa |
transcript | LOC_Os10g20630.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TACATTCAATGGTGTGCAGTTTAAAGGCGATGGCTACAGCAATTGTGAAC CTGCTGGACCAGGAAAGTGCTTGATAAATCATGGCGGCTGTTGGCATGAGAEST: gi|58594426|gb|CF992734.1|CF992734
genomic: TACATTCAATGGTGTGCAGTTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatatttc ... ttatttgcagCTGCTGGACCAGGAAAGTGCTTGATAAATCATGGCGGCTGTTGGCATGAGA
EST: TACATTCAATGGTGTGCAGTTTAAAGGCGATGGCTACAGCAATTGTGAAC CTGCTGGACCAGGAAAGTGCTTGATAAATCATGGCGGCTGTCGGCATGAGAEST: gi|33692858|gb|CF321097.1|CF321097
genomic: TACATTCAATGGTGTGCAGTTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatatttc ... ttatttgcagCTGCTGGACCAGGAAAGTGCTTGATAAATCATGGCGGCTGTTGGCATGAGA
EST: TACATTCAATGGTGTGCAGTTTAAAGGCGACGGCTACAGCAATTGTGAAC CTGCTGGACCAGGAAAGTGCTTGATAAATCATGGCGGCTGTTGGCATGAGAEST: gi|33796525|gb|CF324129.1|CF324129
genomic: TACATTCAATGGTGTGCAGTTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatatttc ... ttatttgcagCTGCTGGACCAGGAAAGTGCTTGATAAATCATGGCGGCTGTTGGCATGAGA
EST: TACATTCAATGGTGTGCAGTTTAAAGGCGATGGCTACAGCAATTGTGAAC CTGCTGGACCAGGAAAGTGCTTGATAAATCATGGCGGCTGTTGGCATGAGAEST: gi|300215523|gb|HO088149.1|HO088149
genomic: TACATTCAATGGTGTGCAGTTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatatttc ... ttatttgcagCTGCTGGACCAGGAAAGTGCTTGATAAATCATGGCGGCTGTTGGCATGAGA
EST: TACATTCAATGGTGTGCAGTTTAAAGGCGATGGCTACAGCAATTGTGAAC CTGCTGGACCAGGAAAGTGCTTGATAAATCATGGCGGCTGTTGEST: gi|29674931|gb|CB671206.1|CB671206
genomic: TACATTCAATGGTGTGCAGTTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatatttc ... ttatttgcagCTGCTGGACCAGGAAAGTGCTTGATAAATCATGGCGGCTGTTG
EST: TACATTCAATGGTGTGCAGTTTAAAGGCGATGGCTACAGCAATTGTGAAC CTGCTGGACCACGAAAGTGCTTGATAAATCATGGCGGCTGTTGGCATGAGA
genomic: TACATTCAATGGTGTGCAGTTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatatttc ... ttatttgcagCTGCTGGACCAGGAAAGTGCTTGATAAATCATGGCGGCTGTTGGCATGAGA
tatactgcagaagtttgccgtaattgataattcatataaatgattttatttgcagCTGCTGGACCAGGAAAGTGCTTGATAAATCATGGCGGCTGTTGGCATGAGACTCGCAATGGCAAAACATTTTCTGCTTGTCAG
aattgat putative branch site (score: 66)
ttttattt putative PPT
taattgataattcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatttgaacttgctctccttatgataacttatttgaagcataatatatactgcagaagtttgccgtaattgataattcatataaatgattttatttgcagCTGCTGGACCAGGAAAGTGCTTGATAAATCATGGCGGCTGTTGGCATGAGACTCGCAATGGCAAAACATTTTCTGCTTGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - cttgctc
- - - - - - - - -cttatga
- - - - - - - - - - - - - - - - -tgaagca
- - - - - - - - - - - - - - - - - - - - - - - -tactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgccg