1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...actactgtttatccactcgcataccgtataaaaggttgatcaaacttataagtacatctccttgtttagctggaatcatggtcatgtactgtttttgtagGATGGAAGGAAGCAATAAACGCAGATCATGTGAAGCTTGTCCTGTGCCCTGAAGGCTGAAGCAAGTAACGTGGGATCCTGTTGAGCCGGCGAAGTAGCAA
species | Oryza sativa |
transcript | LOC_Os09g39660.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACGAGGCGCCATCTTTTCCAGTAAAGAAGCAGCTGCCTTCCTTTCTCAAA GATGGAAGGAAGCAATAAACGCAGATCAEST: gi|86429952|gb|CI082375.1|CI082375
genomic: ACGAGGCGCCATCTTTTCCAGTAAAGAAGCAGCTGCCTTCCTTTCTCAAAgtaattatct ... gtttttgtagGATGGAAGGAAGCAATAAACGCAGATCA
EST: AAAGAAGCAGCTGCCTTCCTTTCTCAAA GATGGAAGGAAGCAATATACGCAGATCATGTGAAGCTTGTCCTGTGCCCTG
genomic: AAAGAAGCAGCTGCCTTCCTTTCTCAAAgtaattatct ... gtttttgtagGATGGAAGGAAGCAATAAACGCAGATCATGTGAAGCTTGTCCTGTGCCCTG
ttataagtacatctccttgtttagctggaatcatggtcatgtactgtttttgtagGATGGAAGGAAGCAATAAACGCAGATCATGTGAAGCTTGTCCTGTGCCCTGAAGGCTGAAGCAAGTAACGTGGGATCCTGTTGAGCCGGCGAAGTAGCAA
ctgttttt CT-rich tract
tttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actactgtttatccactcgcataccgtataaaaggttgatcaaacttataagtacatctccttgtttagctggaatcatggtcatgtactgtttttgtagGATGGAAGGAAGCAATAAACGCAGATCATGTGAAGCTTGTCCTGTGCCCTGAAGGCTGAAGCAAGTAACGTGGGATCCTGTTGAGCCGGCGAAGTAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG