Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagaatggtcgaaagttttctttgcaggatttgcagtgacacattagaattatttactatattacattgtccacagGTGGAAAGGAGGGAGAAGTAGTAAGCTAGAAGGATCAGATCATATTCCAGTTTATATTGTGCTGAATGAGATACCTGAACTTCCAGTTCATAACACTCCT

Basic information

species Oryza sativa
transcript LOC_Os09g36530.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g36530.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G103458_T01 (Zea mays), 3'ss of exon 7
--------------------gtatagaatggtcgaaagtt--ttctttgcaggatttgcagtgacacattagaattatttactatattacattgtccacagGTGGAAAGGAGGGAGAAGTAGTAAGCTAGAAGGATCAGATCATATTCCAGTTTATATTGTGCTGAATGAGATACCTGAACTTCCAGTTCATAACACTCCT
                    || |    ||    |||||   |    | || |||| || |||  |||||||||| ||||||| |||  |||| || ||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||| | ||||| || |||||||||||||| || ||||| |  || 
gtaaagaatactggatatcagttttttctgaaataaagtggatagcatacatgattggctgtgttacattagaatgatttactctatc-cattctctacagGTGGAAAGGGGGAAGAAGCAGTAAGCTAGAAGGATCTGATCATATTCCAGTTTATATTTTACTGAAAGAAATACCTGAACTTCCGGTCCATAATATCCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcaggatttgcagtgacacattagaattatttactatattacattgtccacagGTGGAAAGGAGGGAGAAGTAGTAAGCTAGAAGGATCAGATCATATTCCAGTTTATATTGTGCTGAATGAGATACCTGAACTTCCAGTTCATAACACTCCT
                   acattagaattattta  TA-rich tract